1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taatagacagaatattattttcttgcacagttgttgagataatttgtagctatctctttgctactgtgactaattatcatttaattgtattacttttcagGTTCTTGAAAGAGCACTGGCAGAATGTGACAATGACCTAGATTCTGCCATGAAGAGCCTGCATGAGCATCATTCAAGATATATGGAGAAAAGAATAGGTT
species | Vitis vinifera |
transcript | Vv09s0002g07130.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGCTCCCCTTCGTCAACTCGCTGCTACCTTTCCTCTCCTCGACTTCCAG GTTCTTGAAAGAGCACTAGCAGAATGTGACAATGACCTAGATTCTGCCATGEST: gi|71871535|gb|DT020590.1|DT020590
genomic: CTGCTCCCCTTCGTCAACTCGCTGCTACCTTTCCTCTCCTCGACTTCCAGgttttgtttt ... tacttttcagGTTCTTGAAAGAGCACTGGCAGAATGTGACAATGACCTAGATTCTGCCATG
EST: CTGCTCCCCTTCGTCAACTCGCTGCTACCTTTCCTCTCCTCGACTTCCAG GTTCTTGAAAGAGCACTAGCAGAATGTGACAATGACCTAGATTCTGCCATGEST: gi|161714120|gb|FC063826.1|FC063826
genomic: CTGCTCCCCTTCGTCAACTCGCTGCTACCTTTCCTCTCCTCGACTTCCAGgttttgtttt ... tacttttcagGTTCTTGAAAGAGCACTGGCAGAATGTGACAATGACCTAGATTCTGCCATG
EST: CTGCTCCCCTTCGTCAACTCGCTGCTACCTTTCCTCTCCTCGACTTCCAG GTTCTTGAAAGAGCACTAGCAGAATGTGACAATGACCTAGATTCTGCCATGEST: gi|71862643|gb|DT011698.1|DT011698
genomic: CTGCTCCCCTTCGTCAACTCGCTGCTACCTTTCCTCTCCTCGACTTCCAGgttttgtttt ... tacttttcagGTTCTTGAAAGAGCACTGGCAGAATGTGACAATGACCTAGATTCTGCCATG
EST: CTGCTCCCCTTCGTCAACTCGCTGCTACCTTTCCTCTCCTCGACTTCCAG GTTCTTGAAAGAGCACTAGCAGAATGTGACAATGACCTAGATTCTGCCATGEST: gi|71863561|gb|DT012616.1|DT012616
genomic: CTGCTCCCCTTCGTCAACTCGCTGCTACCTTTCCTCTCCTCGACTTCCAGgttttgtttt ... tacttttcagGTTCTTGAAAGAGCACTGGCAGAATGTGACAATGACCTAGATTCTGCCATG
EST: CTGCTCCCCTTCGTCAACTCGCTGCTACCTTTCCTCTCCTCGACTTCCAG GTTCTTGAAAGAGCACTAGCAGAATGTGACAATGACCTAGATTCTGCCATG
genomic: CTGCTCCCCTTCGTCAACTCGCTGCTACCTTTCCTCTCCTCGACTTCCAGgttttgtttt ... tacttttcagGTTCTTGAAAGAGCACTGGCAGAATGTGACAATGACCTAGATTCTGCCATG
gtagctatctctttgctactgtgactaattatcatttaattgtattacttttcagGTTCTTGAAAGAGCACTGGCAGAATGTGACAATGACCTAGATTCTGCCATGAAGAGCCTGCATGAGCATCATTCAAGATATATGGAGAAAAGAATAGGTT
ttacttttc CT-rich tract
actaattatcatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatagacagaatattattttcttgcacagttgttgagataatttgtagctatctctttgctactgtgactaattatcatttaattgtattacttttcagGTTCTTGAAAGAGCACTGGCAGAATGTGACAATGACCTAGATTCTGCCATGAAGAGCCTGCATGAGCATCATTCAAGATATATGGAGAAAAGAATAGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - agacaga
- - - - - - - - - - -cttgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctactgt