1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aggtttctgtatttagttgatgtgattctctaaaacaatgtattggcttgtatccacccatatacttattccattgttttggtaattaatcattttgcagAGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG
species | Vitis vinifera |
transcript | Vv09s0002g06460.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAG AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGEST: gi|110380681|gb|EC945965.1|EC945965
genomic: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAGgtaaccggtg ... cattttgcagAGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG
EST: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAG AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGEST: gi|349823577|gb|FQ414987.1|FQ414987
genomic: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAGgtaaccggtg ... cattttgcagAGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG
EST: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAG AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGEST: gi|110378701|gb|EC943845.1|EC943845
genomic: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAGgtaaccggtg ... cattttgcagAGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG
EST: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAG AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGEST: gi|30132619|gb|CB917958.1|CB917958
genomic: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAGgtaaccggtg ... cattttgcagAGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG
EST: ATGTTAATCTCGCAAAG AGGTATATGCAGCAACACAATGAAGTGGAACTTTGAGCTCTTGGAATGGEST: gi|110418470|gb|EC984627.1|EC984627
genomic: ATGTTAATCTCGCAAAGgtaaccggtg ... cattttgcagAGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG
EST: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAG AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGEST: gi|110378310|gb|EC943434.1|EC943434
genomic: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAGgtaaccggtg ... cattttgcagAGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG
EST: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAG AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGEST: gi|32267782|gb|CD716941.1|CD716941
genomic: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAGgtaaccggtg ... cattttgcagAGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG
EST: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAG AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGEST: gi|110382504|gb|EC946801.1|EC946801
genomic: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAGgtaaccggtg ... cattttgcagAGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG
EST: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAG AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGEST: gi|26266752|gb|CA817815.1|CA817815
genomic: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAGgtaaccggtg ... cattttgcagAGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG
EST: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAG AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGEST: gi|27586722|gb|CB009417.1|CB009417
genomic: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAGgtaaccggtg ... cattttgcagAGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG
EST: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAG AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGEST: gi|32271236|gb|CD720395.1|CD720395
genomic: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAGgtaaccggtg ... cattttgcagAGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG
EST: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAG AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGEST: gi|110695756|gb|EE074133.1|EE074133
genomic: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAGgtaaccggtg ... cattttgcagAGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG
EST: ATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAG AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGEST: gi|110392645|gb|EC958212.1|EC958212
genomic: ATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAGgtaaccggtg ... cattttgcagAGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG
EST: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAG AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGEST: gi|71877464|gb|DT026519.1|DT026519
genomic: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAGgtaaccggtg ... cattttgcagAGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG
EST: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAG AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG
genomic: AGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCAAAGgtaaccggtg ... cattttgcagAGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG
gcttgtatccacccatatacttattccattgttttggtaattaatcattttgcagAGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG
aattaat putative branch site (score: 3)
tcatttt CT-rich tract
taattaatcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggtttctgtatttagttgatgtgattctctaaaacaatgtattggcttgtatccacccatatacttattccattgttttggtaattaatcattttgcagAGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - -tgatgtg
- - - - - - - - - - - - - - - -aaaacaa
- - - - - - - - - - - - - - - - - - - - - -tggcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - -ccaccca