Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttctcttctcaaatcccgaattggtccggtcggttgccgagaaatcgcaggaaaacttctggaaaagaaaattttaaatctgagaacgatttcttgccagctgaactgagtgtgaatttctcgcagatatttggattgtcatgtgatttatttcttatcatgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTATTGCGACCGGGCATGAGCGTGAAGAACTTGAAGCTGCGCTTGAT

Basic information

species Vitis vinifera
transcript Vv09s0002g06000.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110383499|gb|EC947874.1|EC947874
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCAG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|71869211|gb|DT018266.1|DT018266
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCAG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|37184968|gb|CF604321.1|CF604321
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCAG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110710069|gb|EE086082.1|EE086082
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110416472|gb|EC982456.1|EC982456
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110372596|gb|EC936778.1|EC936778
EST:     TTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAATTGAAGATGTAATGCCTA
genomic: TTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|77583916|gb|DV220998.1|DV220998
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCAG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110729376|gb|EE105272.1|EE105272
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|30130611|gb|CB915950.1|CB915950
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAATTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110409652|gb|EC975320.1|EC975320
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110391356|gb|EC956324.1|EC956324
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCAG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110732279|gb|EE107427.1|EE107427
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110363963|gb|EC927598.1|EC927598
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTCTCCAAGGAAAAGAAGAGAATTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110388157|gb|EC952876.1|EC952876
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAATTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|22015288|gb|BQ800322.1|BQ800322
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCAG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|351023328|gb|FQ432711.1|FQ432711
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCAG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110358977|gb|EC919699.1|EC919699
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAATTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|34416754|gb|CF415508.1|CF415508
EST:     CGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAATTGAAGATGTAATGCCTA
genomic: CGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110388522|gb|EC953282.1|EC953282
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCAG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110688079|gb|EE066223.1|EE066223
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|71890751|gb|DT039806.1|DT039806
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCAG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|51989643|gb|CV179098.1|CV179098
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAATTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110720795|gb|EE097031.1|EE097031
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110686825|gb|EE064905.1|EE064905
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|22011533|gb|BQ796567.1|BQ796567
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|351021701|gb|FQ437086.1|FQ437086
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCAG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|37188662|gb|CF608011.1|CF608011
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAATTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110726657|gb|EE102629.1|EE102629
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|22011530|gb|BQ796564.1|BQ796564
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110697767|gb|EE075131.1|EE075131
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAATTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110419881|gb|EC986135.1|EC986135
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110689245|gb|EE065301.1|EE065301
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAATTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110383239|gb|EC947598.1|EC947598
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAATTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|351028470|gb|FQ444751.1|FQ444751
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAATTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110383358|gb|EC947726.1|EC947726
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAATTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|37189375|gb|CF608724.1|CF608724
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|351015867|gb|FQ431822.1|FQ431822
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAATTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110705917|gb|EE083315.1|EE083315
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110704719|gb|EE081713.1|EE081713
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110417183|gb|EC983218.1|EC983218
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110687315|gb|EE064616.1|EE064616
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAATTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|37187454|gb|CF606807.1|CF606807
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCAG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|71890518|gb|DT039573.1|DT039573
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCAG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110372495|gb|EC936667.1|EC936667
EST:     TTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAATTGAAGATGTAATGCCTA
genomic: TTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|37189413|gb|CF608762.1|CF608762
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110384407|gb|EC948841.1|EC948841
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCAG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|22015168|gb|BQ800202.1|BQ800202
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCAG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA
EST: gi|110377523|gb|EC942592.1|EC942592
EST:     GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCG                         CTGACAATGCTGTTTCCAAGGAAAAGAAGAGAATTGAAGATGTAATGCCTA
genomic: GTTTCGGCGAACCGCTTCTCTCTTTTCTCGCCAGTTCAGCGCCGAATCCGgtaatttctc ... tgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttctcgcagatatttggattgtcatgtgatttatttcttatcatgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTATTGCGACCGGGCATGAGCGTGAAGAACTTGAAGCTGCGCTTGAT
                              atttatttcttatcat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatttctcttctcaaatcccgaattggtccggtcggttgccgagaaatcgcaggaaaacttctggaaaagaaaattttaaatctgagaacgatttcttgccagctgaactgagtgtgaatttctcgcagatatttggattgtcatgtgatttatttcttatcatgatttgtagCTGACAATGCTGTTTCCAAGGAAAAGAAGAGAGTTGAAGATGTAATGCCTATTGCGACCGGGCATGAGCGTGAAGAACTTGAAGCTGCGCTTGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC