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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataatttgatctattttttcattataacgaatcaatattctttcaatatgcgcattttttcaccacttaatttatccattttttttctttggctatttgttccttagTGAAATTACGCGTGAGTTCTCAAAGATAGCACTGGAGCTGGATCATTTGGTAACCAAAATGATTTTTGAAAGCTATGGTGTTGGGAAGTACTATGACTCT

Basic information

species Vitis vinifera
transcript Vv09s0002g05350.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161713688|gb|FC062828.1|FC062828
EST:     ATTCAAAGTTTTGCGAATCTCATGTGGCCTGCTGGAAATGATCATTTCTG                         TGAAATTACGTGTGAGTTCTCAAAGATAGCACTGGAGCTGGATCATTTGGT
genomic: ATGCAAAGTTTTGCGAATCTCATGTGGCCTGCTGGAAATGATCATTTCTGgtataatttg ... tgttccttagTGAAATTACGCGTGAGTTCTCAAAGATAGCACTGGAGCTGGATCATTTGGT
EST: gi|122689487|gb|EC940165.1|EC940165
EST:     ATGCAAAGTTTTGCGAATCTCATGTGGCCTGCTGGAAATGATCATTTCTG                         TGAAATCACGCGTGAGTTCTCAAAGATAGCACTGGAGCTGGATCATTTGGT
genomic: ATGCAAAGTTTTGCGAATCTCATGTGGCCTGCTGGAAATGATCATTTCTGgtataatttg ... tgttccttagTGAAATTACGCGTGAGTTCTCAAAGATAGCACTGGAGCTGGATCATTTGGT
EST: gi|161716510|gb|FC066201.1|FC066201
EST:     ATTCAAAGTTTTGCGAATCTCATGTGGCCTGCTGGAAATGATCATTTCTG                         TGAAATTACGTGTGAGTTCTCAAAGATAGCACTGGAGCTGGATCATTTGGT
genomic: ATGCAAAGTTTTGCGAATCTCATGTGGCCTGCTGGAAATGATCATTTCTGgtataatttg ... tgttccttagTGAAATTACGCGTGAGTTCTCAAAGATAGCACTGGAGCTGGATCATTTGGT
EST: gi|161707815|gb|FC056455.1|FC056455
EST:     ATGCAAAGTTTTGCGAATCTCATGTGGCCTGCTGGAAATGATCATTTCTG                         TGAAATCACGCGTGAGTTCTCAAAGATAGCACTGGAGCTGGATCATTTGGT
genomic: ATGCAAAGTTTTGCGAATCTCATGTGGCCTGCTGGAAATGATCATTTCTGgtataatttg ... tgttccttagTGAAATTACGCGTGAGTTCTCAAAGATAGCACTGGAGCTGGATCATTTGGT
EST: gi|161721115|gb|FC071008.1|FC071008
EST:     ATGCAAAGTTTTGCGAATCTCATGTGGCCTGCTGGAAATGATCATTTCTG                         TGAAATCACGCGTGAGTTCTCAAAGATAGCACTGGAGCTGGATCATTTGGT
genomic: ATGCAAAGTTTTGCGAATCTCATGTGGCCTGCTGGAAATGATCATTTCTGgtataatttg ... tgttccttagTGAAATTACGCGTGAGTTCTCAAAGATAGCACTGGAGCTGGATCATTTGGT
EST: gi|161721829|gb|FC070508.1|FC070508
EST:     ATTCAAAGTTTTGCGAATCTCATGTGGCCTGCTGGAAATGATCATTTCTG                         TGAAATTACGTGTGAGTTCTCAAAGATAGCACTGGAGCTGGATCATTTGGT
genomic: ATGCAAAGTTTTGCGAATCTCATGTGGCCTGCTGGAAATGATCATTTCTGgtataatttg ... tgttccttagTGAAATTACGCGTGAGTTCTCAAAGATAGCACTGGAGCTGGATCATTTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattttttcaccacttaatttatccattttttttctttggctatttgttccttagTGAAATTACGCGTGAGTTCTCAAAGATAGCACTGGAGCTGGATCATTTGGTAACCAAAATGATTTTTGAAAGCTATGGTGTTGGGAAGTACTATGACTCT
            acttaat  putative branch site (score: 4)
                          ttttttttctttggct  putative PPT
              ttaatttatccatttt  TA-rich tract