Skip to another splice site:
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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatgagcgtatttttcgagatttatgataatcaaaatctatggctccaccacaaaacccttgaagaagaactaattcttttgttaaatatgtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA

Basic information

species Vitis vinifera
transcript Vv09s0002g05150.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g05150.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G03840.1 (Glycine max), 3'ss of exon 1
-----gatgagcgtatttttcgagatttatgataatcaaaatctatggctccaccacaaaacccttgaagaagaactaattcttttgttaaatatgtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA
        ||      |    | ||        || |||||   |       |  |  |   |   ||| |  ||   |||  ||||    | || ||||| |||  || || |||||  |||| || | ||| ||  |  ||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||
caattatagaataggatgaaagggaaccgaaccaaacaaaaggcaaaaaataattatgag--cagcgaaaattaat--atttgtttgccgga-atctgttgacagTGGAGGCCTTGAAGAATGCGGACAATTCTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTTGTTGGAGATGTCCCTTGGGA

upper sequence: Vv09s0002g05150.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA15G01560.1 (Glycine max), 3'ss of exon 1
gatgagcgtatttttcgagatttatgataatcaaaatctatggctccaccacaaaacccttgaagaagaactaattcttttgtt-aaatatgtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA
 || |   | |    | | | |     ||   |   || |    |      |||    |   |   | || ||||  | ||||| |||||  ||||| ||||   ||| ||||| ||||  || | |   ||  |  |||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||
-atcaaaatctaaaaccaaaatatctctacctagcctcaagaaattattggcaatcaacaatagcgataattaatattcttgtttaaataaatgttgacagGCTCAGCGTTGAAGGATGAGGAGAATGTTGAACAAGTTCCCATATACGAGGACAAAGATGGTGACTGGATGCTCGTTGGAGATGTTCCTTGGGA

upper sequence: Vv09s0002g05150.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA13G43780.1 (Glycine max), 3'ss of exon 1
gatgagcgtattt--ttcgagatttatgataatcaaaatctatggctccaccacaaa-acccttgaagaagaactaattcttttgttaaatatgtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA
 |  |||   | |  |  || |  | | | | |  || |  |||||       |||  | |  ||| ||  |  ||||  |||  || || |  ||||| |||| ||||| ||||| ||||| || | | | ||  |  |||||||||| |||||||||||||| ||||||||||| || |||||||| ||||||||
-actagcaattctaataagaaaagtttaaaagtttaagttaatggcaaattggcaatcaacaatgacgataa--taatgttttgttttaaaaaatgttgacagGCGAAGCGTTGAAGGATGCGGAGAATGCTGAACACGTTCCCATATACGAGGACAAAGATGGTGACTGGATGCTCGTTGGAGATGTCCCTTGGGA

upper sequence: Vv09s0002g05150.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G22190.1 (Glycine max), 3'ss of exon 1
gatgagcgtatttttcgagatt-tatgataatcaaaatctatggctccaccacaaaacccttgaag-aagaactaattcttttgttaaatatgtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA
  | |  ||||      |  || |||| | ||| || |  |       |  |  |       | ||  | || ||||   ||||    | || ||||  |||  || || |||||| ||||||| | ||| ||  |  ||||||| ||||||||||||||||| || ||||||||||| |||||||| ||||||||
-ctcacggtataaaataattttgtatggttatccaattaaaaaaaataaaaattagttatgagtagcgaaaattaatatgtttgccgga-atctgttcacagTGGAGGCGTTGAAAAATGCAGACAATTCTGAACACGTTCCCATTTATGAGGACAAAGATGGTGATTGGATGCTTGTTGGAGATGTCCCTTGGGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71879162|gb|DT028217.1|DT028217
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|71878417|gb|DT027472.1|DT027472
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|71880901|gb|DT029956.1|DT029956
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|110726819|gb|EE102932.1|EE102932
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|71878862|gb|DT027917.1|DT027917
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|71877594|gb|DT026649.1|DT026649
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|110729551|gb|EE105619.1|EE105619
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|30136889|gb|CB922227.1|CB922227
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|33401759|gb|CF207386.1|CF207386
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|33405328|gb|CF210955.1|CF210955
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|71880749|gb|DT029804.1|DT029804
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|110427469|gb|EC993907.1|EC993907
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|110421656|gb|EC987956.1|EC987956
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|110420130|gb|EC986393.1|EC986393
EST:     CTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|110386222|gb|EC950802.1|EC950802
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|351022773|gb|FQ428682.1|FQ428682
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|71878173|gb|DT027228.1|DT027228
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|110395338|gb|EC960999.1|EC960999
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|71878196|gb|DT027251.1|DT027251
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|71887829|gb|DT036884.1|DT036884
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|110416250|gb|EC982218.1|EC982218
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|110714253|gb|EE090950.1|EE090950
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|110731617|gb|EE106184.1|EE106184
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|110366465|gb|EC930371.1|EC930371
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|71877762|gb|DT026817.1|DT026817
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|110414546|gb|EC980380.1|EC980380
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|110382395|gb|EC939366.1|EC939366
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|110407064|gb|EC972658.1|EC972658
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|71878702|gb|DT027757.1|DT027757
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|71875441|gb|DT024496.1|DT024496
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|71878031|gb|DT027086.1|DT027086
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|71880206|gb|DT029261.1|DT029261
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|110378143|gb|EC943262.1|EC943262
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATAG                         ATGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|34417018|gb|CF415772.1|CF415772
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|33405242|gb|CF210869.1|CF210869
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|71879193|gb|DT028248.1|DT028248
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|71877884|gb|DT026939.1|DT026939
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|71877754|gb|DT026809.1|DT026809
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|30130482|gb|CB915821.1|CB915821
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|71879063|gb|DT028118.1|DT028118
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|110359952|gb|EC922339.1|EC922339
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|110388793|gb|EC953581.1|EC953581
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|30305349|gb|CB982143.1|CB982143
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|46919760|gb|CN549089.1|CN549089
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|71880241|gb|DT029296.1|DT029296
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|71862818|gb|DT011873.1|DT011873
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|27586550|gb|CB009245.1|CB009245
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
EST: gi|71877753|gb|DT026808.1|DT026808
EST:     CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCG                         GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG
genomic: CTTCAATCTTGTCACCGCTTTTGAGGAGCTTTTCGGGTGTTTCGGCATCGgtgagttgct ... gtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaccacaaaacccttgaagaagaactaattcttttgttaaatatgtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA
                       aactaat  putative branch site (score: 2)
                       aactaattcttttgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gatgagcgtatttttcgagatttatgataatcaaaatctatggctccaccacaaaacccttgaagaagaactaattcttttgttaaatatgtgttggcagGTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - aatcaaa
- - - - - - - - - - - - - - - - - - - tatggct
- - - - - - - - - - - - - - - - - - - - - - - - ccacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cccttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaac