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...atgtgatctatccttcaatttacacctgtcttagcatctcgaaatgggtttctgaatttggtgatgaaatgtttgggttttggtgattgtcatttttcagGGTTGGATCATCAGGTGAGGAAGATAGGTTTGGTTCAAGTGATTTTCAAGCTAAGAATGTGGAATGGGAAGACCAAATCTTGAATACATCCCAGAGGATT
species | Vitis vinifera |
transcript | Vv09s0002g04120.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTTTGGCTGACACCCCAGACCTTCCACACTCATGGAGCCAGCTACTTCT GGTTGGATCATCAGGTGAGGAAGATAGGTTTGGTTCAAGTGATTTTCAAGCEST: gi|294966452|gb|GW839559.1|GW839559
genomic: TCTTTGGCTGACACCCCAGACCTTCCACACTCATGGAGCCAGCTACTTCTgtaaatctct ... catttttcagGGTTGGATCATCAGGTGAGGAAGATAGGTTTGGTTCAAGTGATTTTCAAGC
EST: TCTTTGGCTGACACCCCAGACCTTCCACACTCGTGGAGCCAGCTACTTCT GGTTGGATCATCAGGTGAGGAAGATAGGTTTGGTTCAAGTGATTTTCAAGC
genomic: TCTTTGGCTGACACCCCAGACCTTCCACACTCATGGAGCCAGCTACTTCTgtaaatctct ... catttttcagGGTTGGATCATCAGGTGAGGAAGATAGGTTTGGTTCAAGTGATTTTCAAGC
gggtttctgaatttggtgatgaaatgtttgggttttggtgattgtcatttttcagGGTTGGATCATCAGGTGAGGAAGATAGGTTTGGTTCAAGTGATTTTCAAGCTAAGAATGTGGAATGGGAAGACCAAATCTTGAATACATCCCAGAGGATT
tcatttttc CT-rich tract
aaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtgatctatccttcaatttacacctgtcttagcatctcgaaatgggtttctgaatttggtgatgaaatgtttgggttttggtgattgtcatttttcagGGTTGGATCATCAGGTGAGGAAGATAGGTTTGGTTCAAGTGATTTTCAAGCTAAGAATGTGGAATGGGAAGACCAAATCTTGAATACATCCCAGAGGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - -ccttcaa
- - - - - - - - - - - cacctgt
- - - - - - - - - - - - - - - - -gcatctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgg