1 5' 3' | 2 5' 3' | 3 5' 3' |
...cttaatgaaaactagtctcactttgaaatctgtaacttgtgtctgtaataattagttcttacagtctatgcccattttaatttttatccttggtcaaaagGCAGATCGAAACATGGTAAAACAGTGCAGTGGACATCCAAGGATTTACTCAAGGGCTTGGAAGAGTTTGTACCAATATATGAAATGCGGCCTATTAAAAA
species | Vitis vinifera |
transcript | Vv09s0002g04070.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGCTTCGACGGCCCCGACTCAGATTTCGGATCCCTTGGCGTTCCCTGGT GCAGATCGAAACATGGTAAAACAGTTCAGTGGACATCCAAGGATTTACTCAEST: gi|110685925|gb|EE063069.1|EE063069
genomic: TGGCTTCGACGGCCCCGACTCAGATTTCGGATCCCTTGGCGTTCCCTGGTgtatggattt ... tggtcaaaagGCAGATCGAAACATGGTAAAACAGTGCAGTGGACATCCAAGGATTTACTCA
EST: TGGCTTCGACGGCCCCGACTCAGATTTCGGATCCCTTGGCGTTCCCTGGT GCAGATCGAAACATGGTAAAACAGTGCAGTGGACATCCAAGGATTTACTCAEST: gi|37184655|gb|CF604009.1|CF604009
genomic: TGGCTTCGACGGCCCCGACTCAGATTTCGGATCCCTTGGCGTTCCCTGGTgtatggattt ... tggtcaaaagGCAGATCGAAACATGGTAAAACAGTGCAGTGGACATCCAAGGATTTACTCA
EST: TGGCTTCGACGGCCCCGACTCAGATTTCGGATCCCTTGGCGTTCCCTGGT GCAGATCGAAACATGGTAAAACAGTGCAGTGGACATCCAAGGATTTACTCA
genomic: TGGCTTCGACGGCCCCGACTCAGATTTCGGATCCCTTGGCGTTCCCTGGTgtatggattt ... tggtcaaaagGCAGATCGAAACATGGTAAAACAGTGCAGTGGACATCCAAGGATTTACTCA
taataattagttcttacagtctatgcccattttaatttttatccttggtcaaaagGCAGATCGAAACATGGTAAAACAGTGCAGTGGACATCCAAGGATTTACTCAAGGGCTTGGAAGAGTTTGTACCAATATATGAAATGCGGCCTATTAAAAA
tttttatcctt CT-rich tract
attttaatttttatcc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttaatgaaaactagtctcactttgaaatctgtaacttgtgtctgtaataattagttcttacagtctatgcccattttaatttttatccttggtcaaaagGCAGATCGAAACATGGTAAAACAGTGCAGTGGACATCCAAGGATTTACTCAAGGGCTTGGAAGAGTTTGTACCAATATATGAAATGCGGCCTATTAAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - -aaaacta
- - - - - - - - - - - - - - - - - - - -tgtctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatgcc