Sequence
atgc intronic sequence ATGC exonic sequencegtgagtttgcaactgataacatgtcaatttgatttctctttgaagtgatgtattggtgtgatttattggtagcttatgtttccttccatttcagACGGGTGTTAATAAGCTTGCTGATCTAGTGGGGGTTACTCTTGGTCCAAAAGGGAGGAATGTTGTTCTGGAGAGCAAGTATGGGTCCCCGAAAATTGTTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g03930.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os02g01280.1 (Oryza sativa), 3'ss of exon 2
gtgagtttgcaactgataacatgtcaatttgatttctctttgaagtgatgtattggtgtgatttattggtagcttatgtttccttccatttcagACGGGTGTTAATAAGCTTGCTGATCTAGTGGGGGTTACTCTTGGTCCAAAAGGGAGGAATGTTGTTCTGGAGAGCAAGTATGGGTCCCCGAAAATTGTTA
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gtgagtt-gtacattctaataatt---tctactagcatgatgctatcatctataacatcaacttctgagttgtgacttctattttctatgacagAATGGAGTCAATAAGCTTGCTGATCTCGTTGGAGTCACCCTTGGTCCAAAAGGACGGAATGTTGTCCTTGAGAGCAAGTATGGATCACCTAAAATTGTCA
upper sequence: Vv09s0002g03930.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os06g02380.1 (Oryza sativa), 3'ss of exon 2
gtgagtttgcaactgat--aacatgtcaatttgatttctctttgaagtgatgtattggtgtgatttattggtagcttatgtttccttccatttcagACGGGTGTTAATAAGCTTGCTGATCTAGTGGGGGTTACTCTTGGTCCAAAAGGGAGGAATGTTGTTCTGGAGAGCAAGTATGGGTCCCCGAAAATTGTTA
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gtgagctccaaagttcttggacacatcttatcaaattttggtcactatgattcttagccttgaccaggcactcattagttatttctac-atgtcagACTGGAGTAAACAAGCTTGCTGACCTTGTTGGAGTTACACTGGGACCAAAGGGAAGGAATGTTGTTTTGGAGAGCAAGTATGGGTCCCCTAGGATTGTCA
upper sequence: Vv09s0002g03930.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G133698_T02 (Zea mays), 3'ss of exon 2
gtgagtttgcaactgataacatgtcaatttgatttctctttgaagtgatgtattggtgtgatttattggtagcttatgtttccttccatttcagACGGGTGTTAATAAGCTTGCTGATCTAGTGGGGGTTACTCTTGGTCCAAAAGGGAGGAATGTTGTTCTGGAGAGCAAGTATGGGTCCCCGAAAATTGTTA
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gtgagct--ccacagtttttat-ttattatgatataccgatttgctgttgacccttaaccaggcgctaattgttttttctcccctacatttcagACTGGAGTCAATAAGCTTGCAGACCTAGTCGGAGTTACACTCGGACCAAAGGGAAGGAATGTTGTTTTGGAGAGCAAGTATGGTTCTCCTAAAATTGTTA
upper sequence: Vv09s0002g03930.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G015989_T02 (Zea mays), 3'ss of exon 2
gtgagttt--------gcaactgataacatgtcaatttgatttctctttgaagtgatgtattggtgtgatttattggtagcttatgttt---ccttccatttcagACGGGTGTTAATAAGCTTGCTGATCTAGTGGGGGTTACTCTTGGTCCAAAAGGGAGGAATGTTGTTCTGGAGAGCAAGTATGGGTCCCCGAAAATTGTTA
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gtgagttttctgacaaacatataataacgcttgactaaggccgccgctgctcctcacgttcaagtgtgcgttgcacttacttattacttgattttcctatgtcagAATGGGGTCAACAAGCTTGCAGATCTCGTCGGGGTTACTCTTGGACCAAAGGGGCGAAATGTAGTCCTCGAAAGCAAGTATGGCTCACCTAAAATTGTCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161710172|gb|FC061070.1|FC061070EST: CCAAGGAGTTGTATTTCAACAAGGATGGCTCTGCTATTAAGAAGCTTCAA ACGGGTGTTAATAAGCTTGCTGATCTAGTGGGGGTTACTCTTGGTCCAAAA
genomic: CCAAGGAGTTGTATTTCAACAAGGATGGCTCTGCTATTAAGAAGCTTCAAgtgagtttgc ... tccatttcagACGGGTGTTAATAAGCTTGCTGATCTAGTGGGGGTTACTCTTGGTCCAAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgaagtgatgtattggtgtgatttattggtagcttatgtttccttccatttcagACGGGTGTTAATAAGCTTGCTGATCTAGTGGGGGTTACTCTTGGTCCAAAAGGGAGGAATGTTGTTCTGGAGAGCAAGTATGGGTCCCCGAAAATTGTTA
tgtttccttccatttc CT-rich tract
tgatttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtttgcaactgataacatgtcaatttgatttctctttgaagtgatgtattggtgtgatttattggtagcttatgtttccttccatttcagACGGGTGTTAATAAGCTTGCTGATCTAGTGGGGGTTACTCTTGGTCCAAAAGGGAGGAATGTTGTTCTGGAGAGCAAGTATGGGTCCCCGAAAATTGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG