Sequence
atgc intronic sequence ATGC exonic sequence...ggaatagatggttttatttgaataccccagtcaagcattaattaatagtcccgcatgcttaagaacattgtcatttgcatttctgtttcgctttttacagATGCCGAGAGAAGCAGAGGAAAGAGGCGTCTCGCCTCCAAGCTGTGAATAGGAAGCTGACCGCCATGAACAAGCTTTTGATGGAGGAGAATGATAGGTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AC187157.4_FGT005 (Zea mays), 3'ss of exon 1
---------------------------------------------------ggaatagatggttttatttgaataccccagtcaagcattaattaatagtcccgcatgcttaagaac--attgtcatttgcatttctgtttcgctttt---tacagATGCCGAGAGAAGCAGAGGAAAGAGGCGTCTCGCCTCCAAGCTGTGAATAGGAAGCTGACCGCCATGAACAAGCTTTTGATGGAGGAGAATGATAGGTTG
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gtacggtacggccggtaattatcacaccacacgtgacgtgagccactcctcctctcctctggcgccggctctgtccacccg-cgcgcgtaccgtcgtcgtcctccatggccccgaactaaccgatctccaccggcgcgcatcacgcacgcacgcagGTGCCGGGAGAAGCAGCGGAAGGAGTCGTCCCGGCTGCAGGCGGTAAACCGGAAGCTGACGGCCATGAACAAGCTGCTCATGGAGGAGAACGACCGCCTG
upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G01950.1 (Glycine max), 3'ss of exon 1
ggaatagatggttttatttgaataccccagtcaagcattaattaatagtcccgcatgcttaagaacattgtcatttgcatttctgtttcgctttttacagATGCCGAGAGAAGCAGAGGAAAGAGGCGTCTCGCCTCCAAGCTGTGAATAGGAAGCTGACCGCCATGAACAAGCTTTTGATGGAGGAGAATGATAGGTTG
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---------gtacctaccctaa-acccaactcaccctttttacgattactttaccttttcat---ttttgaccttgttatgttgacttgacttgtc-cagATGTAGAGAGAAGCAGAGAAAGGAGTCGTCGCGGCTCCAAGCTGTCAATAGGAAGCTGACTGCTATGAACAAGCTGCTGATGGAAGAGAATGATAGGTTG
upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G21610.1 (Glycine max), 3'ss of exon 2
----------------ggaatagatggttttat------ttgaataccccagtcaagcat-taattaatagtcccgcatgcttaagaacattgtcatttgcatttctgtttcgctttttacagATGCCGAGAGAAGCAGAGGAAAGAGGCGTCTCGCCTCCAAGCTGTGAATAGGAAGCTGACCGCCATGAACAAGCTTTTGATGGAGGAGAATGATAGGTTG
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gtacctaccctaaactaaagttaccgtttttacaattactttactttttaaattttttatgttgttacttgttatgttgagttgaggtaacttt--tttgttttgtttttgtgagttgttcagATGTAGAGAGAAGCAGAGGAAGGAGTCGTCGCGGCTGCAAGCTGTAAATAGGAAGTTGACTGCCATGAACAAGTTGCTCATGGAGGAGAATGATAGGTTG
upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G21620.2 (Glycine max), 3'ss of exon 1
----------------ggaatagatggtttt-atttgaataccccagtcaag-cattaa-ttaatagtcccgcatgcttaagaacattgtcatttgcatttctgtttcgct------ttttacagATGCCGAGAGAAGCAGAGGAAAGAGGCGTCTCGCCTCCAAGCTGTGAATAGGAAGCTGACCGCCATGAACAAGCTTTTGATGGAGGAGAATGATAGGTTG
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gtacctacccctaactgaagtctattgctttgattttcttttttaagccaattcatcaaattaatttaattctgtgtttgagtgaacttgaaaatgaatgttttgttaataaggtaactgttcagATGTAGAGAGAAGCAGAGGAAGGAGTCGTCGCGGCTGCAAGCTGTAAATAGGAAGTTGACTGCCATGAACAAGCTGCTCATGGAGGAGATTGATAGGTTG
upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G01940.1 (Glycine max), 3'ss of exon 1
ggaatagatggttttatttgaataccccagtcaagcattaattaatagtcccgcatgcttaagaacattgtcatttgcatttctgtttcgctttttacagATGCCGAGAGAAGCAGAGGAAAGAGGCGTCTCGCCTCCAAGCTGTGAATAGGAAGCTGACCGCCATGAACAAGCTTTTGATGGAGGAGAATGATAGGTTG
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---------gtacctaccctaa-acccaactcaccctttttacgattactttaccttttcaa---ttttgaccttgttatgttgacttgacttgtc-cagATGTAGAGAGAAGCAGAGAAAGGAGTCGTCGCGGCTGCAAGCTGTCAATAGGAAGCTGACTGCTATGAACAAGCTGCTGATGGAAGAGAATGATAGGTTG
upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G52150.3 (Arabidopsis thaliana), 3'ss of exon 1
ggaatag--atggtt-ttatttgaataccccagt-----caagcattaat--taatagtcccgcatgcttaagaacattgtcattt-gcatttctgtttcgctttttacagATGCCGAGAGAAGCAGAGGAAAGAGGCGTCTCGCCTCCAAGCTGTGAATAGGAAGCTGACCGCCATGAACAAGCTTTTGATGGAGGAGAATGATAGGTTG
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gtaataacaatgttccttgcttgggaattgtagtgaatggaagtttctgtggtgttctctctatctacttgatctaatctttgttttgtgtttctgttatgaacttta--gATGTAGAGAGAAACAAAGGAAAGAGGCTTCACGGCTTCAAGCTGTGAATCGGAAGTTGACGGCAATGAACAAGCTCTTGATGGAGGAGAATGACAGGTTG
upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ26528 (Selaginella moellendorffii), 3'ss of exon 1
ggaatagatggttttatttgaataccccagtcaag-cattaattaatagtcccgcat-gcttaagaacattgtca-tttgcatttctgtttcgcttt-ttacagATGCCGAGAGAAGCAGAGGAAAGAGGCGTCTCGCCTCCAAGCTGTGAATAGGAAGCTGACCGCCATGAACAAGCTTTTGATGGAGGAGAATGATAGGTTG
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----tcgctagaaccttttttatgctttgtttgaatcactgttctctagtgctgtttcgcttttccattttttaacttttcctctccccttggtgttgtttcagATGCCGTGAGAAGCAGAGAAAAGAGACGTCTCGGCTCCAAAGCGTGAATTCGTCGCTCACGGCCATGAACAAGATTATAATGGAGGAAAACGAGCGACTT
upper sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ14784 (Selaginella moellendorffii), 3'ss of exon 1
ggaatagatggttttatttgaataccccagtcaagcattaattaatagtcccgcat-gcttaagaacattgtca-tttgcatttctgtttcgcttt-ttacagATGCCGAGAGAAGCAGAGGAAAGAGGCGTCTCGCCTCCAAGCTGTGAATAGGAAGCTGACCGCCATGAACAAGCTTTTGATGGAGGAGAATGATAGGTTG
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---ctcgctagaaccttttttatgctttgtttgaacactgttctctagtgctgtttcgcttttccattttttaacttttcctctccccttggtgttgtttcagATGCCGTGAGAAGCAGAGAAAAGAGACGTCTCGTCTCCAAAGCGTGAATTCGTCGCTCACGGCCATGAACAAGATTATAATGGAGGAAAACGAGCGACTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagtcccgcatgcttaagaacattgtcatttgcatttctgtttcgctttttacagATGCCGAGAGAAGCAGAGGAAAGAGGCGTCTCGCCTCCAAGCTGTGAATAGGAAGCTGACCGCCATGAACAAGCTTTTGATGGAGGAGAATGATAGGTTG
tttctgtttcgctttt CT-rich tract
tttttaca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggaatagatggttttatttgaataccccagtcaagcattaattaatagtcccgcatgcttaagaacattgtcatttgcatttctgtttcgctttttacagATGCCGAGAGAAGCAGAGGAAAGAGGCGTCTCGCCTCCAAGCTGTGAATAGGAAGCTGACCGCCATGAACAAGCTTTTGATGGAGGAGAATGATAGGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
-gaataga
- - - - - - - - - - - tacccca
- - - - - - - - - - - - - - - tcaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - gcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catttgc