1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...attgtcgtgttcctgttgctatgatattattgtgtttatctatgtttctttgctcatgtcaatggctatatcaaactgataattttgcattctcttatagATCTTGGAAATGGAGAATTTATTTGAGGAATTTGGAGAAGAAACGCTAGGCCAGGAATTCTGCCAAGATCTTGCCACCAGCTTTAG
species | Vitis vinifera |
transcript | Vv09s0002g03660.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGAAATGGATGATGCCCCTGTTCCTATTGCTTGTTTTACACAATCTGAG ATCTTGGAAATGGAGAATTTATTTGAGGAATTTGGAGAAGAAACGCTAGGCEST: gi|349832345|gb|FQ420906.1|FQ420906
genomic: GAGAAATGGATGATGCCCCTGTTCCTATTGCTTGTTTTACACAATCTGAGgtatgttttc ... tctcttatagATCTTGGAAATGGAGAATTTATTTGAGGAATTTGGAGAAGAAACGCTAGGC
EST: GAGAAATGGATGATGCCCCTGTTCCTATTGCTTGTTTTACACAATCTGAG ATCTTGGAAATGGAGAATTTATTTGAGGAATTTGGAGAAGAAACGCTAGGCEST: gi|294965677|gb|GW839132.1|GW839132
genomic: GAGAAATGGATGATGCCCCTGTTCCTATTGCTTGTTTTACACAATCTGAGgtatgttttc ... tctcttatagATCTTGGAAATGGAGAATTTATTTGAGGAATTTGGAGAAGAAACGCTAGGC
EST: GAGAAATGGATGATGCCCCTGTTCCTATTGCTTGTTTTACACAATCTGAG ATCTTGGAAATGGAGAATTTATTTGAGGAATTTGGAGAAGAAACGCTAGGCEST: gi|351019710|gb|FQ439527.1|FQ439527
genomic: GAGAAATGGATGATGCCCCTGTTCCTATTGCTTGTTTTACACAATCTGAGgtatgttttc ... tctcttatagATCTTGGAAATGGAGAATTTATTTGAGGAATTTGGAGAAGAAACGCTAGGC
EST: GAGAAATGGATGATGCCCCTGTTCCTATTGCTTGTTTTACACAATCTGAG ATCTTGGAAATGGAGAATTTATTTGAGGAATTTGGAGAAGAAACGCTAGGC
genomic: GAGAAATGGATGATGCCCCTGTTCCTATTGCTTGTTTTACACAATCTGAGgtatgttttc ... tctcttatagATCTTGGAAATGGAGAATTTATTTGAGGAATTTGGAGAAGAAACGCTAGGC
ttctttgctcatgtcaatggctatatcaaactgataattttgcattctcttatagATCTTGGAAATGGAGAATTTATTTGAGGAATTTGGAGAAGAAACGCTAGGCCAGGAATTCTGCCAAGATCTTGCCACCAGCTTTAG
aactgat putative branch site (score: 3)
ttttgcattctctt putative PPT
aaactgataatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgtcgtgttcctgttgctatgatattattgtgtttatctatgtttctttgctcatgtcaatggctatatcaaactgataattttgcattctcttatagATCTTGGAAATGGAGAATTTATTTGAGGAATTTGGAGAAGAAACGCTAGGCCAGGAATTCTGCCAAGATCTTGCCACCAGCTTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - -cctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgca