1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cttgatgtgggtagatgatttaggggcttgtctttttatattatttttgttctttttctttcttttattttcttttcttttttacatttttattttgcagATAGAGCCAATACCAAGTGGAAATCTGCCTCCTGGTTTTGATTCAAGTACATGCCGCAGTGT
species | Vitis vinifera |
transcript | Vv09s0002g00880.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCTTCAGCAGCAGTCGCTCTACCACCCCGGCCTCTTGGCTCCTCCTCAG ATAGAGCCAATACCAAGTGGAAATCTGCCTCCTTGTTTTGATTCAAGTACAEST: gi|349811318|gb|FQ407544.1|FQ407544
genomic: TTCTTCAGCAGCAGTCGCTCTACCACCCCGGCCTCTTGGCTCCTCCTCAGgtgcgagtct ... tattttgcagATAGAGCCAATACCAAGTGGAAATCTGCCTCCTGGTTTTGATTCAAGTACA
EST: TTCTTCAGCAGCAGTCGCTCTACCACCCCGGCCTCTTGGCTCCTCCTCAG ATAGAGCCCATACCAAGTGGAAATCTGCCTCCTGGTTTTGATTCAAGTACAEST: gi|161721264|gb|FC069684.1|FC069684
genomic: TTCTTCAGCAGCAGTCGCTCTACCACCCCGGCCTCTTGGCTCCTCCTCAGgtgcgagtct ... tattttgcagATAGAGCCAATACCAAGTGGAAATCTGCCTCCTGGTTTTGATTCAAGTACA
EST: TTCTTCAGCAGCAGTCGCTCTACCACCCCGGCCTCTTGGCTCCTCCTCAG ATAGAGCCAATACCAAGTGGAAATCTGCCTCCTGGTTTTGATTCAAGTACAEST: gi|110694202|gb|EE071104.1|EE071104
genomic: TTCTTCAGCAGCAGTCGCTCTACCACCCCGGCCTCTTGGCTCCTCCTCAGgtgcgagtct ... tattttgcagATAGAGCCAATACCAAGTGGAAATCTGCCTCCTGGTTTTGATTCAAGTACA
EST: TTCTTCAGCAGCAGTCGCTCTACCACCCCGGCCTCTTGGCTCCTCCTCAG ATAGAGCCAATACCAAGTGGAAATCTGCCTCCTGGTTTTGATTCAAGTACAEST: gi|351031018|gb|FQ439054.1|FQ439054
genomic: TTCTTCAGCAGCAGTCGCTCTACCACCCCGGCCTCTTGGCTCCTCCTCAGgtgcgagtct ... tattttgcagATAGAGCCAATACCAAGTGGAAATCTGCCTCCTGGTTTTGATTCAAGTACA
EST: TTCTTCAGCAGCAGTCGCTCTACCACCCCGGCCTCTTGGCTCCTCCTCAG ATAGAGCCAATACCAAGTGGAAATCTGCCTCCTGGTTTTGATTCAAGTACAEST: gi|27755123|gb|CB035878.1|CB035878
genomic: TTCTTCAGCAGCAGTCGCTCTACCACCCCGGCCTCTTGGCTCCTCCTCAGgtgcgagtct ... tattttgcagATAGAGCCAATACCAAGTGGAAATCTGCCTCCTGGTTTTGATTCAAGTACA
EST: TTCTTCAGCAGCAGTCGCTCTACCACCCCGGCCTCTTGGCTCCTCCTCAG ATAGAGCCAATACCAAGTGGAAATCTGCCTCCTGGTTTTGATTCAAGTACAEST: gi|77582239|gb|DV220083.1|DV220083
genomic: TTCTTCAGCAGCAGTCGCTCTACCACCCCGGCCTCTTGGCTCCTCCTCAGgtgcgagtct ... tattttgcagATAGAGCCAATACCAAGTGGAAATCTGCCTCCTGGTTTTGATTCAAGTACA
EST: TTCTTCAGCAGCAGTCGCTCTACCACCCCGGCCTCTTGGCTCCTCCTCAG ATAGAGCCAATACCAAGTGGAAATCTGCCTCCTGGTTTTGATTCAAGTACAEST: gi|110357183|gb|EC920553.1|EC920553
genomic: TTCTTCAGCAGCAGTCGCTCTACCACCCCGGCCTCTTGGCTCCTCCTCAGgtgcgagtct ... tattttgcagATAGAGCCAATACCAAGTGGAAATCTGCCTCCTGGTTTTGATTCAAGTACA
EST: TTCTTCAGCAGCAGTCGCTCTACCACCCCGGCCTCTTGGCTCCTCCTCAG ATAGAGCCAATACCAAGTGGAAATCTGCCTCCTGGTTTTGATTCAAGTACA
genomic: TTCTTCAGCAGCAGTCGCTCTACCACCCCGGCCTCTTGGCTCCTCCTCAGgtgcgagtct ... tattttgcagATAGAGCCAATACCAAGTGGAAATCTGCCTCCTGGTTTTGATTCAAGTACA
tttgttctttttctttcttttattttcttttcttttttacatttttattttgcagATAGAGCCAATACCAAGTGGAAATCTGCCTCCTGGTTTTGATTCAAGTACATGCCGCAGTGT
tttttctttcttttat CT-rich tract
tttcttttattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgatgtgggtagatgatttaggggcttgtctttttatattatttttgttctttttctttcttttattttcttttcttttttacatttttattttgcagATAGAGCCAATACCAAGTGGAAATCTGCCTCCTGGTTTTGATTCAAGTACATGCCGCAGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
cttgatg
- - - - - - - - - - - -gggcttg