Sequence
atgc intronic sequence ATGC exonic sequence...agaataggacattgctaggtttactagtgtttgtaccatgtctttagcagttgttaactgattgttgagtacttgttgctttcttgttctccggtatcagGAGTGATGATGAGGATGATGAATATGGTGTTTATCGCTTAGATTCTGGAACAAGCCATTTTCCTCAGGCAAATGATTTCTATAGTCAAGTTGACTTTGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g00380.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os08g34950.1 (Oryza sativa), 3'ss of exon 1
--agaataggacattgctaggtttactagtgtttgtaccatgtctttagcagttgttaactgattgttgagtacttgttgctttcttgttctccggtatcagGAGTGATGATGAGGATGATGAATATGGTGTTTATCGCTTAGATTCTGGAACAAGCCATTTTCCTCAGGCAAATGATTTCTATAGTCAAGTTGACTTTGAT
|||| | | || | || | | || | | ||| | || || | | | | || |||||||||||||||||||||||| |||| |||| | || |||||| |||| || || | | | |||| | || | || ||||||
tggaaatatcttgcacatgaatcaacaaatgaaaggaagatatgcattattaaggttcaaggagcatta--ttttgacaatccaacacctgttttgtgccagGAGTGATGATGAGGATGATGATTATGCAGTTTTCCACTCAGATTCAAAAACACAACACTTGCAAAATTCTGATGAGTACTTCAAAACTGTGTGTTTTGAT
upper sequence: Vv09s0002g00380.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G05100.1 (Glycine max), 3'ss of exon 1
-agaataggacattgctaggtttac-tagtgtttgtaccatgtctttagcagttgttaactgattgttgagtacttgttgctttcttgttctccggtatcagGAGTGATGATGAGGATGATGAATATGGTGTTTATCGCTTAGATTCTGGAACAAGCCATTTTCCTCAGGCAAATGATTTCTATAGTCAAGTTGACTTTGAT
| | ||| | | |||| |||| ||||| | | | | | || || || || | | | || || | || |||||||||||||||| || ||||| |||||||| ||||| | |||||||| | || ||| |||||| | ||| | | |||| |||| ||| || |
tatcaaccaacagttttgtatttaaactgtgtcaagtccatgagtgttgttgcttttt-ctaatactttgtcatggatcatatgatt-ttaacttgtttcagGAGTGATGATGATGAGGATGAGTATGGTGTATATCGGTCAGATTCTGATATGAGGGATTATCCTCAAGTGAATAACTACTATGTACAAGCTGAGCTTCAC
upper sequence: Vv09s0002g00380.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G01590.1 (Glycine max), 3'ss of exon 2
-agaataggacattgctaggtttac-tagtgtttgtaccatgtctttagcagttgttaactgattgttgagtacttgttgctttcttgttctccggtatcagGAGTGATGATGAGGATGATGAATATGGTGTTTATCGCTTAGATTCTGGAACAAGCCATTTTCCTCAGGCAAATGATTTCTATAGTCAAGTTGACTTTGAT
| | ||| | | |||| |||| | ||||| | | | | || | | || || | | | | | | || | || |||||||||||||||| || ||||| |||||||| ||||| | |||||||| | || |||| |||||||| ||| | | |||| | || ||| |||||
tatcaaccaacagttttgtatttaaactgtgtctagtccatgagtgctgttgctttt--tctaatattttgtcatagatcatatgattttaacttgtttcagGAGTGATGATGATGAGGATGAGTATGGTGTATATCGGTCAGATTCTGATATGAGGCATTATCCTCAGGTGAATAACTACTATGAACGAGCTGAGCTTGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agcagttgttaactgattgttgagtacttgttgctttcttgttctccggtatcagGAGTGATGATGAGGATGATGAATATGGTGTTTATCGCTTAGATTCTGGAACAAGCCATTTTCCTCAGGCAAATGATTTCTATAGTCAAGTTGACTTTGAT
cttgttgctttcttgt CT-rich tract
ttgttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agaataggacattgctaggtttactagtgtttgtaccatgtctttagcagttgttaactgattgttgagtacttgttgctttcttgttctccggtatcagGAGTGATGATGAGGATGATGAATATGGTGTTTATCGCTTAGATTCTGGAACAAGCCATTTTCCTCAGGCAAATGATTTCTATAGTCAAGTTGACTTTGAT
- aatagga
- - - - -cattgct
- - - - - - - - - - - - - - - - - -ccatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattg