Sequence
atgc intronic sequence ATGC exonic sequence...tctcgcaaccaaacagagttttgttttcctgttagggacgggggttatgtatttggttatgacccgtttgataagtgagaataaatgaaaatttttgcagAGGCTTTGCAGTTAGTCTTGTCGGAATGCAAGCCAAAGGCAAAGATTGTTGACATCTGCGAGAAAGGCGATTCATTCATTAGAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0217g00020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G29420.1 (Glycine max), 3'ss of exon 2
--------------------------------------------------------------------------tctcgcaaccaaacagagttttgtt-----ttcctgttagggacgg--gggttatgtatttggttatgacccgt---ttgataagtgagaataaatgaaaatttttgcagAGGCTTTGCAGTTAGTCTTGTCGGAATGCAAGCCAAAGGCAAAGATTGTTGACATCTGCGAGAAAGGCGATTCATTCATTAGAGA
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gtgtgtttcactctctcatttctcattttttttggttaaattctaaaagggtttttgtttttggatacattgggtttattactttgatgggttatcgttaaagctttctgttttactttgatgggttatttgcgtttttatttttcttatgttgatgagtaaggttttgtttttaattaaacagAGGCCTTGCAGTTAGTTATTTCGGAATGTAAACCAAAGACAAAGATTGTTGACCTTTGCGAGAAAGGGGATTCGTATATTAGAGA
upper sequence: Vv08s0217g00020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G07420.1 (Glycine max), 3'ss of exon 2
------------------------------------------------tctcgca-accaaa--cagagttttgttttcctgttagggacgggggttatgtatttggttatgacccgt-ttgataagtgagaataaatgaaaattt--ttg--cagAGGCTTTGCAGTTAGTCTTGTCGGAATGCAAGCCAAAGGCAAAGATTGTTGACATCTGCGAGAAAGGCGATTCATTCATTAGAGA
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gtgtgttacactctcattttttgttaaattcttaatgggtttttggtttttggtacattgggttcattactttgatgggttattgttaatgggttatttgcgtttttatttttcttatgttgatgagttatgttttgttttgttttaattaaacagGGGCTTTGCAGTTAGTTATTTCAGAATGTAAACCGAAGGCAAAGATTGTTGACCTTTGCGAGAAAGGGGATTCGTATATTAGAGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71875961|gb|DT025016.1|DT025016EST: TTCTCCTGAAGTCGTCACCAAATACAAGAGCGCTGCTGAGATTGCTAACA AGGCTTTGCAGTTAGTCTTGTCGGAATGCAAGCCAAAGGCAAAGATTGTTG
genomic: TTCTCCTGAAGTCGTCACCAAATACAAGAGCGCTGCTGAGATTGCTAACAgttactttct ... atttttgcagAGGCTTTGCAGTTAGTCTTGTCGGAATGCAAGCCAAAGGCAAAGATTGTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatgtatttggttatgacccgtttgataagtgagaataaatgaaaatttttgcagAGGCTTTGCAGTTAGTCTTGTCGGAATGCAAGCCAAAGGCAAAGATTGTTGACATCTGCGAGAAAGGCGATTCATTCATTAGAGA
gtttgat putative branch site (score: 5)
tttttgc putative PPT
tgagaataaatgaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctcgcaaccaaacagagttttgttttcctgttagggacgggggttatgtatttggttatgacccgtttgataagtgagaataaatgaaaatttttgcagAGGCTTTGCAGTTAGTCTTGTCGGAATGCAAGCCAAAGGCAAAGATTGTTGACATCTGCGAGAAAGGCGATTCATTCATTAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - ccaaaca
- - - - - - - - - - - - -ttcctgt
- - - - - - - - - - - - - - - - - - - -gggggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataaa