Sequence
atgc intronic sequence ATGC exonic sequence...caggatttttcatgcatcattatcatcgttatcactagttcccgtttcagttaaaattttcttcttactgacctttttcttgctttgtttgatataacagTGTGAAATACAATGTGTCTTATGTGTATCATTCAATGTTTGCATACTTCGACAGGGACAACATTGCTCTCACGGGCCTTGCCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0058g00410.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G06420.2 (Glycine max), 3'ss of exon 1
caggatttttcatgcatcattatc-atcgtta--tcactagttcccgtttcagttaaaattttcttcttactgacctttttcttgctttgtttgatataacagTGTGAAATACAATGTGTCTTATGTGTATCATTCAATGTTTGCATACTTCGACAGGGACAACATTGCTCTCACGGGCCTTGCCAA
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---ctttattcctatctatttatttagggttaattgtttgctttttatttttataaaaaaaataaagtaaaagtttttttttgtctctcaaatctggttgcagTGTGGAATACAACGTTTCCTATGTGTACCATTCCTTGTTTGCGTACTTCGACAGAGACAACATAGCTCTCAAGGGACTTGCCAA
upper sequence: Vv08s0058g00410.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G19060.1 (Glycine max), 3'ss of exon 1
caggatttttcatgcatcattatcatcgttatcactagttcccgtttcagttaa-aattttcttcttactgacctttttcttgctttgtttgatataacagTGTGAAATACAATGTGTCTTATGTGTATCATTCAATGTTTGCATACTTCGACAGGGACAACATTGCTCTCACGGGCCTTGCCAA
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-aattattactttacaaagaaagtaaatttatacttttttttgcatgcatctaataatggtcctctgctaagagctttacctcttatattgtgtgtcacagTGTGGAATACAATGCTTCCTATGCGTACCACTCCTTGTTTGCATACTTTGACAGGGACAACGTGGCTCTCAAGGGATTTGCCAA
upper sequence: Vv08s0058g00410.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G43650.1 (Glycine max), 3'ss of exon 1
-caggatttttcatgcatcattatcatcgttatcactagttcccgtttcagttaaaattt-tcttcttactgacctttttcttgctttgtttgatataacagTGTGAAATACAATGTGTCTTATGTGTATCATTCAATGTTTGCATACTTCGACAGGGACAACATTGCTCTCACGGGCCTTGCCAA
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acgagatcttac-tgtacaaggaaaatgaaaataaact-ttctttttgcatgcatggttggccctctgcttagaccttttcctcttcaattatattttacagTGTGGAATACAATGCTTCCTACGTGTACCACTCCTTGTTTGCATACTTTGACAGGGACAACGTGGCTCTCAAGGGATTTGCCAA
upper sequence: Vv08s0058g00410.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G31300.1 (Glycine max), 3'ss of exon 1
caggatttttcatgcatcattatcatcgttatcactagttcccgtttcagttaaaattttcttcttactgacctttttcttgctttg--tttgatata-----acagTGTGAAATACAATGTGTCTTATGTGTATCATTCAATGTTTGCATACTTCGACAGGGACAACATTGCTCTCACGGGCCTTGCCAA
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--tgcatgttcatactttgtttttatg-----tatttatttatgggttaattgttgggttttttttattaactctttgttttttttgcctctgaaatctggttacagTGTGGAATACAACGTTTCCTATGTGTACCACGCCTTGTTTGCGTACTTCGACAGAGACAACATAGCTCTCAAAGGACTTGCAAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110359752|gb|EC921829.1|EC921829EST: CGCCAAGGCTATTCCGAGGAGTGTGAAGCAGCCATTAATGAACAAATCAA TGTGGAATACAATGTGTCTTATGTGTATCATTCAATGTTTGCATACTTCGA
genomic: CGCCAAGGCTATTCCGAGGAGTGTGAAGCAGCCATTAATGAACAAATCAAgtgggtttta ... gatataacagTGTGAAATACAATGTGTCTTATGTGTATCATTCAATGTTTGCATACTTCGA
EST:
gi|26267152|gb|CA818215.1|CA818215EST: CGCCAAGGCTATTCCGAGGAGTGTGAAGCAGCCATTAATGAGCAAATCAA TGTGGAATACAATGTGTCTTATGTGTATCATTCAATGTTTGCATACTTCGA
genomic: CGCCAAGGCTATTCCGAGGAGTGTGAAGCAGCCATTAATGAACAAATCAAgtgggtttta ... gatataacagTGTGAAATACAATGTGTCTTATGTGTATCATTCAATGTTTGCATACTTCGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcagttaaaattttcttcttactgacctttttcttgctttgtttgatataacagTGTGAAATACAATGTGTCTTATGTGTATCATTCAATGTTTGCATACTTCGACAGGGACAACATTGCTCTCACGGGCCTTGCCAA
ttaaaattttcttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
caggatttttcatgcatcattatcatcgttatcactagttcccgtttcagttaaaattttcttcttactgacctttttcttgctttgtttgatataacagTGTGAAATACAATGTGTCTTATGTGTATCATTCAATGTTTGCATACTTCGACAGGGACAACATTGCTCTCACGGGCCTTGCCAA
- - - - -tcatgca
- - - - - - - - - - - - - - - - - - agttccc