1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtccagatctaccccatttcccacttttcttttctcaccccctttccccatcactcactctcttccttttgcagTTCAGCAGCTCCACATCCTCTCTTCCTTGTCTGTCAAAGATGCTGCTCCCAATTGTGGAAAGAAGCACAGCCGCTCTGTCTCAGATCTGAGCGATCATCA
species | Vitis vinifera |
transcript | Vv08s0056g00150.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGCAACTGCGGCAGCACTGAGGATAACCCTGTCGTTTCTCACGCTCAAG TTCAGCAGCTCCACATCCTCTCTTCCTTGTCTGTCAAAGATGCTGCTCCCA
genomic: GGGCAACTGCGGCAGCACTGAGGATAACCCTGTCGTTTCTCACGCTCAAGgtccagatct ... ccttttgcagTTCAGCAGCTCCACATCCTCTCTTCCTTGTCTGTCAAAGATGCTGCTCCCA
cccacttttcttttctcaccccctttccccatcactcactctcttccttttgcagTTCAGCAGCTCCACATCCTCTCTTCCTTGTCTGTCAAAGATGCTGCTCCCAATTGTGGAAAGAAGCACAGCCGCTCTGTCTCAGATCTGAGCGATCATCA
cactcac putative branch site (score: 2)
ttcttttctcaccccc CT-rich tract
ttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccagatctaccccatttcccacttttcttttctcaccccctttccccatcactcactctcttccttttgcagTTCAGCAGCTCCACATCCTCTCTTCCTTGTCTGTCAAAGATGCTGCTCCCAATTGTGGAAAGAAGCACAGCCGCTCTGTCTCAGATCTGAGCGATCATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC