Sequence
atgc intronic sequence ATGC exonic sequence...catattcgctcgtcccagtcaaagagataaacattacgttatcatttgtgttcggttttttttccctctgaaactcacttcatctgctaatgagtttcagATTAGCACCAAAAGTGGTGACTGTTGTAGAGCAAGACCTGAGCCACGCCGGCTCCTTCTTGGGAAGGTTCGTGGAGGCCATACATTACTACTCGGCGCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0056g00050.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G131516_T02 (Zea mays), 3'ss of exon 1
--catattcgctcgtcccagtcaaagagataaacattacgttatcatttgtgttcggttttttttccctctgaaactcacttcatctgctaatgagtttcagATTAGCACCAAAAGTGGTGACTGTTGTAGAGCAAGACCTGAGCCACGCCGGCTCCTTCTTGGGAAGGTTCGTGGAGGCCATACATTACTACTCGGCGCTG
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gacagacagggat-tcggaatcgaatggctagctggtgacaaatcgcacggggattaataaactacattg-gtcattgattccatcccccacacacctgcagGCTGGCCCCCAAGGTGGTGACAATGGTGGAGCAGGACCTGAGCCACTCGGGCTCCTTCCTGGCGCGCTTCGTGGAGGCCATCCACTACTACTCGGCGCTG
upper sequence: Vv08s0056g00050.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G45220.1 (Glycine max), 3'ss of exon 4
catattcgctcgtcccagtcaaagagataaacattacgttatcatttgtgttcggttttt--tttccctctgaaactcacttcatctgctaatgagtttcagATTAGCACCAAAAGTGGTGACTGTTGTAGAGCAAGACCTGAGCCACGCCGGCTCCTTCTTGGGAAGGTTCGTGGAGGCCATACATTACTACTCGGCGCTG
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gatacttattaacatttgtcataaa--ttcattttatacgaagaattatgattggataatagtataaatatgaaacttattgcatggacttgtgttatgcagGCTGGCACCTAAAGTGGTGACTGTGGTGGAGCAGGACCTAAGCAACACTGGTTCATTCTTGGGGAGGTTTGTGGAAGCCATACACTACTACTCAGCATTA
upper sequence: Vv08s0056g00050.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G40620.1 (Glycine max), 3'ss of exon 6
--catattcgctcgtcccagtcaaagagataaacattacgttatcatttgtgttcggttttttttccctctgaaactcacttcatctgcta-atgagtttcagATTAGCACCAAAAGTGGTGACTGTTGTAGAGCAAGACCTGAGCCACGCCGGCTCCTTCTTGGGAAGGTTCGTGGAGGCCATACATTACTACTCGGCGCTG
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tttttataaattcattttacataacgaaattgtgatcggatgagtgtaagcttttacgctgatgatgctgc---atttattgcatggactttgttttatgcagACTGGCACCTAAAGTGGTGACTGTGGTAGAGCAGGACCTAAGCAATACTGGTTCATTCTTGGGGAGGTTTGTGGAAGCCATACACTACTACTCAGCATTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtgttcggttttttttccctctgaaactcacttcatctgctaatgagtttcagATTAGCACCAAAAGTGGTGACTGTTGTAGAGCAAGACCTGAGCCACGCCGGCTCCTTCTTGGGAAGGTTCGTGGAGGCCATACATTACTACTCGGCGCTG
tgctaat putative branch site (score: 2)
tttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
catattcgctcgtcccagtcaaagagataaacattacgttatcatttgtgttcggttttttttccctctgaaactcacttcatctgctaatgagtttcagATTAGCACCAAAAGTGGTGACTGTTGTAGAGCAAGACCTGAGCCACGCCGGCTCCTTCTTGGGAAGGTTCGTGGAGGCCATACATTACTACTCGGCGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - -cccagtc
- - - - - - - - - - - - -gataaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catctgc