Sequence
atgc intronic sequence ATGC exonic sequence...aaaaaataaaaaatggctttcaaaaataattaccaaatatggtcttaatttcttgggttatgcttgtgctgtctccaacgttcaatttggtgctttacagTTACAGAAACATCGAATGGATTGCAAGCATGGAGGATATTAAAAGATACAAGCAATCATATTGATCTTGTATTAACTGAGGTGAATTTACCTCGTCTATC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g03120.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G05520.1 (Glycine max), 3'ss of exon 1
aaaaaataaaaaatggctttcaaaaataattaccaaatatggtcttaatttcttgggttatgcttgt--gctgtctccaacgttcaatttggtgctttacagTTACAGAAACATCGAATGGATTGCAAGCATGGAGGATATTAAAAGATACAAGCAATCATATTGATCTTGTATTAACTGAGGTGAATTTACCTCGTCTATC
| || | ||| | | ||| || ||||| | || | | || |||| | | || || || ||| |||||| ||| || | || ||||||||||| |||| |||||| | ||| || |||||||||||||||||| |||||||||||| | ||| | ||||
ataattgctattatgaatatttctaat--ttttttaatataattctacatgaagagtctaatattgttaaataagatcttaatttgcgtttgtattttccagTTATTGAAGCAGCAAACGGATTGCAAGCTTGGAAGATATTGGAGGATTTAACCAATCATATTGATCTTGTTTTAACTGAGGTGGCAATGCCTGGCTTATC
upper sequence: Vv08s0040g03120.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA13G19870.1 (Glycine max), 3'ss of exon 1
aaaaaataaaaaatggctttcaaaaataattaccaaatatggtcttaatttcttgggttatgcttgtgctgtctc-caacgt-tcaatttg-----gtgctttacagTTACAGAAACATCGAATGGATTGCAAGCATGGAGGATATTAAAAGATACAAGCAATCATATTGATCTTGTATTAACTGAGGTGAATTTACCTCGTCTATC
|| | || ||| | || ||| || |||||| | || | || | || ||| ||| | || || | |||||| || ||| |||||| || || | |||||||||||||| |||| |||||| | ||| || ||||||||||||||| | |||||||||||| | ||| | ||||
--aatttcaatcatgaatatctctaatttttttaaaatataattcta----catgaagagt-ctggtgttgttacataaggtcttaatttgtgtttgttttttccagTTATTGACGCAGCAAATGGATTGCAAGCTTGGAAGATATTGGAGGATTTAACCAATCATATTGATCTCATTTTAACTGAGGTGGCAATGCCTGGCTTATC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taatttcttgggttatgcttgtgctgtctccaacgttcaatttggtgctttacagTTACAGAAACATCGAATGGATTGCAAGCATGGAGGATATTAAAAGATACAAGCAATCATATTGATCTTGTATTAACTGAGGTGAATTTACCTCGTCTATC
tcttaat putative branch site (score: 3)
ttcaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaaaataaaaaatggctttcaaaaataattaccaaatatggtcttaatttcttgggttatgcttgtgctgtctccaacgttcaatttggtgctttacagTTACAGAAACATCGAATGGATTGCAAGCATGGAGGATATTAAAAGATACAAGCAATCATATTGATCTTGTATTAACTGAGGTGAATTTACCTCGTCTATC
aaaaaat
- aaaataa
- - - - - - - - - - - - - - - taccaaa
- - - - - - - - - - - - - - - - - - - - - - - - -ttcttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgtg