Sequence
atgc intronic sequence ATGC exonic sequencegtgagcatacctctctcttattccagatcttttcatataactggcctgggttttgaatgtagtcgatgcgatgaagattatgaatacacatgatttgtaagcagGTGCAACGCCTGATAGAGGAGTGCATCATCTTCAATATGAGCAGAGAAGAATGCATGGAAGCCCTCTCCAAACATGCTGACATCAAACCAGTCATCACTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g02650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G33110.1 (Glycine max), 3'ss of exon 1
gtgagcatacctctctcttattccagatcttttcatataactggcctgggttttgaatgtagtcg-atgcgatgaagattatgaata-cacatgatttgtaagcagGTGCAACGCCTGATAGAGGAGTGCATCATCTTCAATATGAGCAGAGAAGAATGCATGGAAGCCCTCTCCAAACATGCTGACATCAAACCAGTCATCACTT
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----ttttgtttccttttggtggcatacgtat--ataagttctgatgaagtgaagggtatatttgcatacatataatataattataatcataatacatatgtgtagGTGCACCGTCTGATAGAGGAGTGTATCCTATTCAACATGAGCAAAGAAGAGTGCATGGAAGCTCTTTCCAAACATGCAAATATCAAGCCGGTTATTACCT
upper sequence: Vv08s0040g02650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA19G35810.1 (Glycine max), 3'ss of exon 1
gtgagcatacctctctcttattccagatcttttcatataactggcctgggttt-tgaatgtagtcgatgcgatgaagattatgaatacacatgatttgtaagcagGTGCAACGCCTGATAGAGGAGTGCATCATCTTCAATATGAGCAGAGAAGAATGCATGGAAGCCCTCTCCAAACATGCTGACATCAAACCAGTCATCACTT
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---tttgtttctttttggtggaatacatatataagttctgatgatgaaggtatatatatgcacacataaatatatataatataattataatacatatgt--gtagGTGCACCGTCTGATAGAGGAGTGTATCCTATTCAACATGAGCAAAGAAGAGTGCATGGAAGCTCTTTCCAAACATGCAAATATCAAGCCTGTTATTACCT
upper sequence: Vv08s0040g02650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA13G19600.1 (Glycine max), 3'ss of exon 1
gtgagcatacctctctcttattccagatcttttcatataactggcctgggtt--ttgaatgtagtcgatgcgatgaagattatgaatacacatgatttgtaagcagGTGCAACGCCTGATAGAGGAGTGCATCATCTTCAATATGAGCAGAGAAGAATGCATGGAAGCCCTCTCCAAACATGCTGACATCAAACCAGTCATCACTT
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---ttttcttccttttctttttggtgatatatacgtaatactaaattataatgatttagttttatatattttttgttg-ccat-aatgtgcat-ataaatgactagGTGCACCGTCTGATAGAGGAGTGTATCCTATTCCACATGAGTCAAGAGGAATGCATGGAAGCTCTTTCCAAACATGCAAATATCAAACCGGTTATTACCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22012300|gb|BQ797334.1|BQ797334EST: CATCGTCATCACCGGTCATGGGTGAATCTTCCGCTTCATATATCCACATG GTGCAACGCCTGATAGAGGAGTGCATCATCTTCAATATGAGCAGAGAAGAA
genomic: CATCGTCATCACCGGTCATGGGTGAATCTTCCGCTTCATATATCCACATGgtgagcatac ... ttgtaagcagGTGCAACGCCTGATAGAGGAGTGCATCATCTTCAATATGAGCAGAGAAGAA
EST:
gi|110422937|gb|EC989271.1|EC989271EST: GGGTGAATCTTCCGCTTCATATATCCACATG GTGCAACGCCTGATAGAGGAGTGCATCATCTTCAATATGAGCAGAGAAGAA
genomic: GGGTGAATCTTCCGCTTCATATATCCACATGgtgagcatac ... ttgtaagcagGTGCAACGCCTGATAGAGGAGTGCATCATCTTCAATATGAGCAGAGAAGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttttgaatgtagtcgatgcgatgaagattatgaatacacatgatttgtaagcagGTGCAACGCCTGATAGAGGAGTGCATCATCTTCAATATGAGCAGAGAAGAATGCATGGAAGCCCTCTCCAAACATGCTGACATCAAACCAGTCATCACTT
attatgaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagcatacctctctcttattccagatcttttcatataactggcctgggttttgaatgtagtcgatgcgatgaagattatgaatacacatgatttgtaagcagGTGCAACGCCTGATAGAGGAGTGCATCATCTTCAATATGAGCAGAGAAGAATGCATGGAAGCCCTCTCCAAACATGCTGACATCAAACCAGTCATCACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG