Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttctgatttgagattcgatgttctatttttggttggatttcgagattttctttattttcacaaagaatcgtatgtgaaatttggagttttgagatttttttcctaatttttagaaaatgtatttgattgacgagaatcaggttgtttctttgcctttgcttgtgaatcttcatgttgtgcagGTTGTTCCGGGGATGTATTGCAGTCAGGAGTTTGTGTCTAACTACCCCTACTCGTCTCTTTTCTACAAGGGAGTCACTCGCAATGGATCACCGCCTTGGA

Basic information

species Vitis vinifera
transcript Vv08s0040g02640.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161721562|gb|FC069760.1|FC069760
EST:     AACGTCCTCGCTTGACCTGGGACATGCCTCCTCCCCTTCCCCCTCCCAAG                         GTTGTTCCGGGGATGTATTGCAGTCAGGAGTTTGTGTCTAAC
genomic: AACGTCCTCGCTTGACCTGGGACATGCCTCCTCCCCTTCCCCCTCCCAAGgtttgttctg ... tgttgtgcagGTTGTTCCGGGGATGTATTGCAGTCAGGAGTTTGTGTCTAAC
EST: gi|352774223|gb|FQ474746.1|FQ474746
EST:     AACGTCCTCGCTTGACCTGGGACATGCCTCCTCCCCTTCCCCCTCCCAAG                         GTTGTTCCGGGGATGTATTGCAGTCAGGAGTTTGTGTCTAACTACCCCTAC
genomic: AACGTCCTCGCTTGACCTGGGACATGCCTCCTCCCCTTCCCCCTCCCAAGgtttgttctg ... tgttgtgcagGTTGTTCCGGGGATGTATTGCAGTCAGGAGTTTGTGTCTAACTACCCCTAC
EST: gi|352789724|gb|FQ476322.1|FQ476322
EST:     AACGTCCTCGCTTGACCTGGGACATGCCTCCTCCCCTTCCCCCTCCCAAG                         GTTGTTCCGGGGATGTATTGCAGTCAGGAGTTTGTGTCTAACTACCCCTAC
genomic: AACGTCCTCGCTTGACCTGGGACATGCCTCCTCCCCTTCCCCCTCCCAAGgtttgttctg ... tgttgtgcagGTTGTTCCGGGGATGTATTGCAGTCAGGAGTTTGTGTCTAACTACCCCTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgacgagaatcaggttgtttctttgcctttgcttgtgaatcttcatgttgtgcagGTTGTTCCGGGGATGTATTGCAGTCAGGAGTTTGTGTCTAACTACCCCTACTCGTCTCTTTTCTACAAGGGAGTCACTCGCAATGGATCACCGCCTTGGA
                                       tcttcat  CT-rich tract
                 tttcttt  TA-rich tract