Sequence
atgc intronic sequence ATGC exonic sequence...agaaaatacctggtgttgatgttgttggactttgttacatccataaaaaaatgttgttggactttgttactaggcttagggtgattttttctcaatgcagTTGAATCCACAAAAAAGACTGACCCAAAAGCCCAGGCCCAAAAGGCTGCCAAGACAGTGAAATCAGGTGGAGGGACTTTTAAGAAGAAAGCCAAGAAAAT
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37187636|gb|CF606989.1|CF606989EST: GAGTTTTAGCCTTTTAGGTGACATTTGGTGGGCAATGGCTCCTTCGAAAG TTGAATCCACAAAAAAGACTGACCCAAAAGCCCAGGCCCAAAAGGCTGCCA
genomic: GAGTTTTAGCCTTTTAGGTGACATTTGGTGGGCAATGGCTCCTTCGAAAGgtatgtattt ... ctcaatgcagTTGAATCCACAAAAAAGACTGACCCAAAAGCCCAGGCCCAAAAGGCTGCCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaaaatgttgttggactttgttactaggcttagggtgattttttctcaatgcagTTGAATCCACAAAAAAGACTGACCCAAAAGCCCAGGCCCAAAAGGCTGCCAAGACAGTGAAATCAGGTGGAGGGACTTTTAAGAAGAAAGCCAAGAAAAT
ttttttctc CT-rich tract
tgatttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agaaaatacctggtgttgatgttgttggactttgttacatccataaaaaaatgttgttggactttgttactaggcttagggtgattttttctcaatgcagTTGAATCCACAAAAAAGACTGACCCAAAAGCCCAGGCCCAAAAGGCTGCCAAGACAGTGAAATCAGGTGGAGGGACTTTTAAGAAGAAAGCCAAGAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
agaaaat
- - - - - -ggtgttg
- - - - - - - - - - -ttgttgg
- - - - - - - - - - - - - - - - - - acatcca
- - - - - - - - - - - - - - - - - - - - - - aaaaaaa