1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...actgactctattaaacctataatcaaaatgacactgattattttcggcaagctgttttacatagttgacattttatgaactttgaatttgttggcaccagGTAGTTGAAACTAAAGCTTTGTGGGGTTGAGTACAAGAAAATGGGGAGGAAAGGGAACTGGCTTTCTTCCGTAAAGAAGGCTCTCAGCCCAGAACCCAAG
species | Vitis vinifera |
transcript | Vv08s0040g02360.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAGACCCAATTCCCAAGTTACCAAGTTCTCCTCAGATCTTCCTTTGCAG GTAGTTGAAACTAAAGCTTTGTGGGGTTGCGTACAAGAAAAGTGGGGAGGAEST: gi|110394178|gb|EC958785.1|EC958785
genomic: GGAGACCCAATTCCCAAGTTACCAAGTTCTCCTCAGATCTTCCTTTGCAGgtactttgtc ... ttggcaccagGTAGTTGAAACTAAAGCTTTGTGGGGTTGAGTACAAGAAAA-TGGGGAGGA
EST: GGAGACCCAATTCCCAAGTTACCAAGTTCTCCTCAGATCTTCCTTTGCAG GTAGTTGAAACTAAAGCTTTGTGGGGTTGAGTACAAGAAAATGGGGAGGAA
genomic: GGAGACCCAATTCCCAAGTTACCAAGTTCTCCTCAGATCTTCCTTTGCAGgtactttgtc ... ttggcaccagGTAGTTGAAACTAAAGCTTTGTGGGGTTGAGTACAAGAAAATGGGGAGGAA
ggcaagctgttttacatagttgacattttatgaactttgaatttgttggcaccagGTAGTTGAAACTAAAGCTTTGTGGGGTTGAGTACAAGAAAATGGGGAGGAAAGGGAACTGGCTTTCTTCCGTAAAGAAGGCTCTCAGCCCAGAACCCAAG
agttgac putative branch site (score: 4)
attttatgaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actgactctattaaacctataatcaaaatgacactgattattttcggcaagctgttttacatagttgacattttatgaactttgaatttgttggcaccagGTAGTTGAAACTAAAGCTTTGTGGGGTTGAGTACAAGAAAATGGGGAGGAAAGGGAACTGGCTTTCTTCCGTAAAGAAGGCTCTCAGCCCAGAACCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - aaaccta
- - - - - - - - - - aatcaaa
- - - - - - - - - - - - - - -gacactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgaac