1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atataataattcatgagtatgttttaccatcaataacatttggtctgtggacttgctcttttcctctcagctattattaattcctaatttgtatttgcagCCAGGGCTGGTGTTGCAGAAAATGTCTCTCTTATTTATCCTGTGGAAAATATGACGATAGATGGTGGACATTATTCTTCTCATTGGAACCCCCCACCAAG
species | Vitis vinifera |
transcript | Vv08s0040g02160.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGACGTGGAATCATATGAATGCTGATCAGCCTTACTTGG CGAGGGCTGGTGTTGCAGAAAATGTCTCTCTTATTTATCCTGTGGAAAATAEST: gi|161708447|gb|FC057872.1|FC057872
genomic: AGACATGGAATCATATGAATGCTGATCAGCCTTACTTGGgtattgaaat ... gtatttgcagCCAGGGCTGGTGTTGCAGAAAATGTCTCTCTTATTTATCCTGTGGAAAATA
EST: TGACCACGATCAGACGTGGAATCATATGAATGCTGATCAGCCTTACTTGG CGAGGGCTGGTGTTGCAGAAAATGTCTCTCTTATTTATCCTGTGGAAAATAEST: gi|161717180|gb|FC069567.1|FC069567
genomic: TGACCACGATCAGACATGGAATCATATGAATGCTGATCAGCCTTACTTGGgtattgaaat ... gtatttgcagCCAGGGCTGGTGTTGCAGAAAATGTCTCTCTTATTTATCCTGTGGAAAATA
EST: TGACCACGATCAGACGTGGAATCATATGAATGCTGATCAGCCTTACTTGG CGAGGGCTGGTGTTGCAGAAAATGTCTCTCTTATTTATCCTGTGGAAAATAEST: gi|110359144|gb|EC920158.1|EC920158
genomic: TGACCACGATCAGACATGGAATCATATGAATGCTGATCAGCCTTACTTGGgtattgaaat ... gtatttgcagCCAGGGCTGGTGTTGCAGAAAATGTCTCTCTTATTTATCCTGTGGAAAATA
EST: AGACGTGGAATCATATGAATGCTGATCAGCCTTACTTGG CGAGGGCTGGTGTTGCAGAAAATGTCTCTCTTATTTATCCTGTGGAAAATAEST: gi|110359202|gb|EC920316.1|EC920316
genomic: AGACATGGAATCATATGAATGCTGATCAGCCTTACTTGGgtattgaaat ... gtatttgcagCCAGGGCTGGTGTTGCAGAAAATGTCTCTCTTATTTATCCTGTGGAAAATA
EST: AGACGTGGAATCATATGAATGCTGATCAGCCTTACTTGG CGAGGGCTGGTGTTGCAGAAAATGTCTCTCTTATTTATCCTGTGGAAAATA
genomic: AGACATGGAATCATATGAATGCTGATCAGCCTTACTTGGgtattgaaat ... gtatttgcagCCAGGGCTGGTGTTGCAGAAAATGTCTCTCTTATTTATCCTGTGGAAAATA
tgtggacttgctcttttcctctcagctattattaattcctaatttgtatttgcagCCAGGGCTGGTGTTGCAGAAAATGTCTCTCTTATTTATCCTGTGGAAAATATGACGATAGATGGTGGACATTATTCTTCTCATTGGAACCCCCCACCAAG
tcctaat putative branch site (score: 2)
tattattaattcctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atataataattcatgagtatgttttaccatcaataacatttggtctgtggacttgctcttttcctctcagctattattaattcctaatttgtatttgcagCCAGGGCTGGTGTTGCAGAAAATGTCTCTCTTATTTATCCTGTGGAAAATATGACGATAGATGGTGGACATTATTCTTCTCATTGGAACCCCCCACCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - -catgagt
- - - - - - - - - - - - - ccatcaa