1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gatttaaattagtagattttttttctggactatttcttattggaaaacaaacggaggtttagggtttaatttgtccaattttgagggttttgatctgcagAAAGCAGATACTGCATCTAACGAGAAAAATAGAGCGTCTGCGGTTGCTTTGAACGCCGAGATTCGTCGGACCAAGGCTCGATTGCTGGAGGAGGTCCCTA
species | Vitis vinifera |
transcript | Vv08s0040g02130.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCTCGTCTCTACGCCGTCGTTGAAGCCGACATCGAGGCCGCTCTTCAG AAAGCGGATACTGCATCTAACGAGAAAAATAGAGCGTCTGCGGTTGCTTTGEST: gi|110724614|gb|EE100606.1|EE100606
genomic: TCGCTCGTCTTTACGCCGTCGTTGAAGCCGACATCGAGGCCGCTCTTCAGgtccaattcc ... tgatctgcagAAAGCAGATACTGCATCTAACGAGAAAAATAGAGCGTCTGCGGTTGCTTTG
EST: TCGCTCGTCTTTACGCCGTCGTTGAAGCCGACATCGAGGCCGCTCTTCAG AAAGCGGATACTGCATCTAACGAGAAAAATAGAGCGTCTGCGGTTGCTTTGEST: gi|37187903|gb|CF607254.1|CF607254
genomic: TCGCTCGTCTTTACGCCGTCGTTGAAGCCGACATCGAGGCCGCTCTTCAGgtccaattcc ... tgatctgcagAAAGCAGATACTGCATCTAACGAGAAAAATAGAGCGTCTGCGGTTGCTTTG
EST: TCGCTCGTCTCTACGCCGTCGTTGAAGCCGACATCGAGGCCGCTCTTCAG AAAGCGGATACTGCATCTAACGAGAAAAATAGAGCGTCTGCGGTTGCTTTGEST: gi|110728123|gb|EE103426.1|EE103426
genomic: TCGCTCGTCTTTACGCCGTCGTTGAAGCCGACATCGAGGCCGCTCTTCAGgtccaattcc ... tgatctgcagAAAGCAGATACTGCATCTAACGAGAAAAATAGAGCGTCTGCGGTTGCTTTG
EST: TCGCTCGTCTCTACGCCGCCGTTGAAGCCGACATCGAGGCCGCTCTTCAG AAAGCGGATACTGCATCTAACGAGAAAAATAGAGCGTCTGCGGTTGCTTTG
genomic: TCGCTCGTCTTTACGCCGTCGTTGAAGCCGACATCGAGGCCGCTCTTCAGgtccaattcc ... tgatctgcagAAAGCAGATACTGCATCTAACGAGAAAAATAGAGCGTCTGCGGTTGCTTTG
aacaaacggaggtttagggtttaatttgtccaattttgagggttttgatctgcagAAAGCAGATACTGCATCTAACGAGAAAAATAGAGCGTCTGCGGTTGCTTTGAACGCCGAGATTCGTCGGACCAAGGCTCGATTGCTGGAGGAGGTCCCTA
ttttgat putative branch site (score: 4)
tttaatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatttaaattagtagattttttttctggactatttcttattggaaaacaaacggaggtttagggtttaatttgtccaattttgagggttttgatctgcagAAAGCAGATACTGCATCTAACGAGAAAAATAGAGCGTCTGCGGTTGCTTTGAACGCCGAGATTCGTCGGACCAAGGCTCGATTGCTGGAGGAGGTCCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - -tttctgg
- - - - - - - - - - - - - - - - - - - - - - aaacaaa