Sequence
atgc intronic sequence ATGC exonic sequencegtctgtatcacaccacttttttcttttttttcttttttctttacttcccctttgttttgtgttttatgttcacttagcaaatgtcaccctttttccttttttttttttttggtaaacagCCAAAGCTTTGTTTGGACAGGATGAATGGTATTTCTTTACACCAAGAGATAGGAAGTATCCAAATGGAGTGAGGCCTAATAGAGCAGCAGCTTCAGGTTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g02110.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G09180.1 (Glycine max), 3'ss of exon 1
-----------------------gtctgtatcacaccacttttttcttttttttcttttttc--tttacttcccctttgtt-ttgtgttttatgttcactt--agcaaatgtcaccctttttccttttttttttttttggtaaacagCCAAAGCTTTGTTTGGACAGGATGAATGGTATTTCTTTACACCAAGAGATAGGAAGTATCCAAATGGAGTGAGGCCTAATAGAGCAGCAGCTTCAGGTTA-
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gtgttagcaattgcattgttttagtttgtgtttcattcttttcttgaagtatttacttagtgggataaggcttttgttgttattgttgtttctattgtcttgaagtagtaattactaaagcaatgatagcttttcattt-tgaacaagCAAAGCTTTGTTTGGGGAGGATGAGTGGTATTTCTTTACTCCTAGAGATAGGAAGTATCCCAATGGAGTGAGGCCTAATAGAGCAACTACTTCTGGTTAT
upper sequence: Vv08s0040g02110.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G27120.1 (Glycine max), 3'ss of exon 2
gtctgtatcacaccacttttttcttttttttcttttttctttacttcccctttgttttgtgttttatgttcacttagcaaatgtcaccctttttccttttttttttttttggtaaacagCCAAAGCTTTGTTTGGACAGGATGAATGGTATTTCTTTACACCAAGAGATAGGAAGTATCCAAATGGAGTGAGGCCTAATAGAGCAGCAGCTTCAGGTTA----------------
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--------------------------------------------------------------gtagtaattactaaaggaatgatagc--ttttcatttt-------------gaacaagcaaagctttgtttagGGAGGATGAGTGGTATTTCTTTACTCCTAGAGACAAGAAGTATCCCAATGGAGTGAGGCCTAATAAAGCAGCTGCTTCTGGTTATTGGAAGGCTATTGGG
upper sequence: Vv08s0040g02110.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S5_359V6.1 (Physcomitrella patens), 3'ss of exon 1
gtctgtatcacaccacttttttcttttttttcttttttctttacttcccctttgttttgtgttttatgttcacttagcaaatgtcaccctttttccttttttttttttttggtaaacagCCAAAGCTTTGTTTGGACAGGATGAATGGTATTTCTTTACACCAAGAGATAGGAAGTATCCAAATGGAGTGAGGCCTAATAGAGCAGCAGCTTCAGGTTA
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----------------tagtatcatctcacaaattgaaggcagcgcctaaactatccaacataacg-attcagttgtaaaatactgagctttgagtaaaatgtcatgtttgct--gcagGAAAAGCAATTTTCGGAGAGAGGGAATGGTATTTCTTTAGTCCTAGAGATAGAAAGTACCCTAATGGAGCCAGGCCCAACAGAGCGGCCGCTTCAGGGTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatgttcacttagcaaatgtcaccctttttccttttttttttttttggtaaacagCCAAAGCTTTGTTTGGACAGGATGAATGGTATTTCTTTACACCAAGAGATAGGAAGTATCCAAATGGAGTGAGGCCTAATAGAGCAGCAGCTTCAGGTTA
tgtcaccctttttcct CT-rich tract
tttttccttttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtctgtatcacaccacttttttcttttttttcttttttctttacttcccctttgttttgtgttttatgttcacttagcaaatgtcaccctttttccttttttttttttttggtaaacagCCAAAGCTTTGTTTGGACAGGATGAATGGTATTTCTTTACACCAAGAGATAGGAAGTATCCAAATGGAGTGAGGCCTAATAGAGCAGCAGCTTCAGGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT