1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agggatccatacttgacctgtttaggaatatctttcaagggtgaaatttagagcaagcacttggttatttgctttatggagtctagctttctattttcagGCACTGGGGACCATACATTTGAGCGAAGATTGCGTCTTGGTGGTCCATTGTTGAAGGAAAACATAGCAACCATGGTGCTTGAAAG
species | Vitis vinifera |
transcript | Vv08s0007g07700.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCCAAATTCGTGCCACCCCAGAAGATGGCTTGTGTGGTTCATCTCGCAG GCACTGGGGACCATACATTTGAGCGAAGATTGCGTCTTGGTGGTCCATTGTEST: gi|110733119|gb|EE109032.1|EE109032
genomic: TCCCAAATTCGTGCCACCCCAGAAGATGGCTTGTGTGGTTCATCTTGCAGgtgacgtgat ... ctattttcagGCACTGGGGACCATACATTTGAGCGAAGATTGCGTCTTGGTGGTCCATTGT
EST: TCCCAAATTCGTGCCACCCCAGAAGATGGCTTGTGTGGTTCATCTTGCAG GCACTGGGGACCATACATTTGAGCGAAGATTGCGTCTTGGTGGTCCATTGT
genomic: TCCCAAATTCGTGCCACCCCAGAAGATGGCTTGTGTGGTTCATCTTGCAGgtgacgtgat ... ctattttcagGCACTGGGGACCATACATTTGAGCGAAGATTGCGTCTTGGTGGTCCATTGT
atttagagcaagcacttggttatttgctttatggagtctagctttctattttcagGCACTGGGGACCATACATTTGAGCGAAGATTGCGTCTTGGTGGTCCATTGTTGAAGGAAAACATAGCAACCATGGTGCTTGAAAG
ctttctattttc CT-rich tract
tttctatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agggatccatacttgacctgtttaggaatatctttcaagggtgaaatttagagcaagcacttggttatttgctttatggagtctagctttctattttcagGCACTGGGGACCATACATTTGAGCGAAGATTGCGTCTTGGTGGTCCATTGTTGAAGGAAAACATAGCAACCATGGTGCTTGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- ggatcca
- - - - - - - - cctgttt
- - - - - - - - - - - -aggaata
- - - - - - - - - - - - - - - - - - - - - - - - - - gcaagca