Sequence
atgc intronic sequence ATGC exonic sequencegtttgcttctatatacctacctcattcatatataatccttatcaattaattaaaaataaaatacttgtattaaaatttgaagttggttttccgatctatgtctgcagGTAAAGCTGTTTTTGGCGAGAAGGAGTGGTATTTTTTCAGTCCTAGAGATCGCAAGTACCCCAATGGACTAAGACCCAACAGAGCTGCTGCGTCAGGCTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g07670.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G26740.1 (Glycine max), 3'ss of exon 1
gtttgcttctatatacctacctcattcatatataatccttatcaattaattaaaaataaaatacttgtattaaaatttgaagttggttttccgatctatgtctgcagGTAAAGCTGTTTTTGGCGAGAAGGAGTGGTATTTTTTCAGTCCTAGAGATCGCAAGTACCCCAATGGACTAAGACCCAACAGAGCTGCTGCGTCAGGCTA
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---ttcgtgtgcactagaagagttttaattttcttttcttctttttttgtggtgtgtgatgtggaag-attgatgtttt---tttgtttgttgtggttcttcaacagCTAAGGCCGCGTTTGGGGAGAAAGAGTGGTACTTCTTCAGTCCTAGAGACCGGAAGTACCCAAATGGAGCGAGGCCAAACAGGGCAGCAGCTTCAGGGTA
upper sequence: Vv08s0007g07670.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G07700.1 (Glycine max), 3'ss of exon 1
gtttgcttctatatacctacctcattcatatataatccttatcaattaatta-aaaataaaatacttgtattaaaatttgaagttggttttccgatctatgtctgcagGTAAAGCTGTTTTTGGCGAGAAGGAGTGGTATTTTTTCAGTCCTAGAGATCGCAAGTACCCCAATGGACTAAGACCCAACAGAGCTGCTGCGTCAGGCTA
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---cactagaagagttttaattttcttaattttcttctttttgtatggagtgtgatgtggaagattgatgtt----tttttgtttggtgtacgtggatct-tcaacagCTAAGGCCGAGTTTGGGGAGAAAGAGTGGTACTTCTTCAGTCCTAGAGACCGGAAGTACCCAAATGGAGCAAGGCCAAACAGGGCAGCAGCTTCAGGGTA
upper sequence: Vv08s0007g07670.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G04740.1 (Glycine max), 3'ss of exon 1
gtttgcttctatatacctacctcattcatatataatccttatcaattaattaaaaataaaatacttgtattaaaatttgaagttggttttccgatctatgtctgcagGTAAAGCTGTTTTTGGCGAGAAGGAGTGGTATTTTTTCAGTCCTAGAGATCGCAAGTACCCCAATGGACTAAGACCCAACAGAGCTGCTGCGTCAGGCTA
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aaata-ttatatgcactattattactcaagaagataaaatatcatgttatgttagaggctagagtta-gtgatggtttg---tttgttgt--ggtttcttttatcagCTAAGGCCACCTTTGGGGAGAAAGAATGGTATTTCTTCAGTCCTAGAGACCGAAAGTACCCAAATGGTGCAAGGCCAAACAGGGCAGCTGCTTCAGGGTA
upper sequence: Vv08s0007g07670.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S5_359V6.1 (Physcomitrella patens), 3'ss of exon 1
--gtttgcttctatatacctacctcatt-catatataatccttatcaattaattaaaaataaaatacttgtattaaaatttgaagttggttttccgatctatgtctgcagGTAAAGCTGTTTTTGGCGAGAAGGAGTGGTATTTTTTCAGTCCTAGAGATCGCAAGTACCCCAATGGACTAAGACCCAACAGAGCTGCTGCGTCAGGCTA
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tagtatcatctcacaaattgaaggcagcgcctaaactatccaacataacgattcagttgtaaaatact-------gagctttgagtaaaatgtcatgtttg---ctgcagGAAAAGCAATTTTCGGAGAGAGGGAATGGTATTTCTTTAGTCCTAGAGATAGAAAGTACCCTAATGGAGCCAGGCCCAACAGAGCGGCCGCTTCAGGGTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71871731|gb|DT020786.1|DT020786EST: CATCATCGCCGATGTCGATATCTACAAGTTTGATCCATGGGAGTTACCTG GTAAAGCTGTTTTTGGCGAGAAGGAGTGGTATTTTTTCAGTCCTAGAGATC
genomic: CATCATCGCCGATGTCGATATCTACAAGTTTGATCCATGGGAGTTACCTGgtttgcttct ... atgtctgcagGTAAAGCTGTTTTTGGCGAGAAGGAGTGGTATTTTTTCAGTCCTAGAGATC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaataaaatacttgtattaaaatttgaagttggttttccgatctatgtctgcagGTAAAGCTGTTTTTGGCGAGAAGGAGTGGTATTTTTTCAGTCCTAGAGATCGCAAGTACCCCAATGGACTAAGACCCAACAGAGCTGCTGCGTCAGGCTA
aaaatacttgtattaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgcttctatatacctacctcattcatatataatccttatcaattaattaaaaataaaatacttgtattaaaatttgaagttggttttccgatctatgtctgcagGTAAAGCTGTTTTTGGCGAGAAGGAGTGGTATTTTTTCAGTCCTAGAGATCGCAAGTACCCCAATGGACTAAGACCCAACAGAGCTGCTGCGTCAGGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC