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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctctctctctatctttctctgtgagttctttggttttttggatttggtatttggggcgttatttctaatcttttattggacttgattgtacagAGAAAGCAAAGATGGGAGAGAAGGAATGGTATTTCTTTTGCCAGAGAGATAGGAAGTATCCTACAGGCATGAGAACGAATCGAGCTACCGAATCTGGATA

Basic information

species Vitis vinifera
transcript Vv08s0007g07640.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g07640.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G07760.1 (Glycine max), 3'ss of exon 1
-------------------------------------------------------gtaatctctctctctatct-------ttctctgtgagttctttggt--tttttggatttggtatttggggcgttattt-ctaatcttttattggacttgattgtacagAGAAAGCAAAGATGGGAGAGAAGGAATGGTATTTCTTTTGCCAGAGAGATAGGAAGTATCCTACAGGCATGAGAACGAATCGAGCTACCGAATCTGGATA
                                                       ||  ||||||  | |            |   | |||  || |   |  | |||   | |    | ||||  |||| ||  || || || ||  || ||  ||||  |||||||||||||||||| ||||| || ||||| ||||||||||| || |||||||||||||| |||||||||||||| ||| |||| ||| ||||||| ||
gtaagtactacttcaattcattaattctctctctattttttttcttttttattttgttttctctcaatttgatgacataggattgatatgatatcatcaatcatctttcattgtcacttgtgggtggttacttgttattcattgatctgaatttgttgtgtagAGAAAGCAAAGATGGGGGAGAAAGATTGGTACTTCTTTTGCCAAAGGGATAGGAAGTATCCAACAGGCATGAGAACCAATAGAGCAACCCAATCTGGGTA

upper sequence: Vv08s0007g07640.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G26810.1 (Glycine max), 3'ss of exon 1
-----------------------------------------------------------------------------------------------gtaatctct-ctctctatctttctctgtgagttctttggttttttggatttggtatttggggcgttatttctaatcttttattggacttgattgtacagAGAAAGCAAAGATGGGAGAGAAGGAATGGTATTTCTTTTGCCAGAGAGATAGGAAGTATCCTACAGGCATGAGAACGAATCGAGCTACCGAATCTGGATA
                                                                                                ||||  |   |    |||||||  ||| |  |     ||  ||     ||  |  |||    |  |||| | || |||||| ||   ||  |||  |||||||||||||||||| ||||| || ||||| ||||||||||| || ||||||||||| || ||||||||| |||| ||| |||| ||| ||||||| ||
gtaagtactttgatcattttctttttattttgacttttgtttttgtttttatctcaatttgatgataattggtattgttgttaattaattatttgttaattaccattaatcatctttcattgtcaccttgcgagtggttaattattattcattgatctga-atttgttattttttat-gggtatgtgtgtgtagAGAAAGCAAAGATGGGGGAGAAAGATTGGTACTTCTTTTGCCAAAGGGATAGGAAGTACCCAACAGGCATGCGAACCAATAGAGCAACCCAATCTGGGTA

upper sequence: Vv08s0007g07640.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA19G28520.1 (Glycine max), 3'ss of exon 1
gtaatctctctctctatctttct--ctgtgagttctttggttttttggatttggtatttggggcgttatttctaatcttttattggacttgattgtacagAGAAAGCAAAGATGGGAGAGAAGGAATGGTATTTCTTTTGCCAGAGAGATAGGAAGTATCCTACAGGCATGAGAACGAATCGAGCTACCGAATCTGGATA
|| | || |       || || |    |  |    | |  || |    |||| |   || |   |  || |  | |   ||     | |   |||| |||||||||| ||||| || ||||| || ||||| ||||| ||||| |  ||||||||||| || || || ||||| || ||| |||| || |||||||| ||
gtcaactgtaataaattcattgtaatagcaaacattcttcttgtgattattttgaggttcgaatgaaatattgactaggttgggttaatgtgttgtgcagAGAAAGCCAAGATAGGGGAGAAAGAGTGGTACTTCTTCTGCCAAAAGGATAGGAAGTACCCAACTGGGATGAGGACCAATAGAGCAACAGAATCTGGGTA

upper sequence: Vv08s0007g07640.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G04720.1 (Glycine max), 3'ss of exon 1
gtaatctctctctctatctttctctgtgagttc---tttggttttttggatttggtatttggg-gcgttatttctaatcttttattggacttgattgtacagAGAAAGCAAAGATGGGAGAGAAGGAATGGTATTTCTTTTGCCAGAGAGATAGGAAGTATCCTACAGGCATGAGAACGAATCGAGCTACCGAATCTGGATA
    ||    |   || ||||  |||   |||     || | |  |||  ||||   ||||   |   ||||       ||   ||    |   |||| |||||||||| ||||| || ||||| || ||||| ||||| || || |  ||||||||||| || || || |||||||| ||| |||| || |||||||| ||
--tctcctaataattaactttagctgctggtttgtaatttgatgattgtttttgaggtttgaatgaaatattgacttggttgagttaatgtgtgttgtgcagAGAAAGCCAAGATAGGGGAGAAAGAGTGGTACTTCTTCTGTCAAAAGGATAGGAAGTACCCAACTGGGATGAGAACCAATAGAGCAACAGAATCTGGGTA

upper sequence: Vv08s0007g07640.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ22540 (Selaginella moellendorffii), 3'ss of exon 1
----------------------------------------------------------------------------------gtaatctctctctc-tatctttctctgtgagttct--ttggttttttggatttggtatttggggcgttatttct-----aatcttttattggacttgattgt-------acagAGAAAGCAAAGATGGGAGAGAAGGAATGGTATTTCTTTTGCCAGAGAGATAGGAAGTATCCTACAGGCATGAGAACGAATCGAGCTACCGAATCTGGATA
                                                                                  |     |  |  || |  | |||   |  | ||    | | |   |||| |   ||     || ||  ||| ||     ||||| |  || |   |  ||          ||||||||||||| |||||||||||||||||||| |||||| ||  ||| ||  ||||||| || || || ||| | |||||||| || |||||  | || ||
gtaaggaggaactctcccatcttctctcgcattcgtttctatgatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGGAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA

upper sequence: Vv08s0007g07640.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ11746 (Selaginella moellendorffii), 3'ss of exon 1
----------------------------------------------------------------------------------gtaatctctctctc-tatctttctctgtgagttct--ttggttttttggatttggtatttggggcgttatttct-----aatcttttattggacttgattgt-------acagAGAAAGCAAAGATGGGAGAGAAGGAATGGTATTTCTTTTGCCAGAGAGATAGGAAGTATCCTACAGGCATGAGAACGAATCGAGCTACCGAATCTGGATA
                                                                                  |     |  |  || |  | |||   |  | ||    | | |   |||| |   ||     || ||  ||| ||     ||||| |  || |   |  ||          ||||||||||||| |||||||||||||||||||| |||||| ||  ||| ||  | ||||| || || || ||| | |||||||| || |||||  | || ||
gtaaggaggaactctctcatcttctctcgcattcgcttctatcatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGTAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA

upper sequence: Vv08s0007g07640.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ37734 (Selaginella moellendorffii), 3'ss of exon 1
------gtaatctctctctctatctttctctgtgagttctttggttttttggatttggtatttggggcgttatttctaatcttttattggact--tgatt-gtacagAGAAAGCAAAGATGGGAGAGAAGGAATGGTATTTCTTTTGCCAGAGAGATAGGAAGTATCCTACAGGCATGAGAACGAATCGAGCTACCGAATCTGGATA
      | |   | ||||   |||||   ||    | | | |  ||| ||||| |  ||     | ||  || |   | | |  | || | ||  || |    ||||| || || ||||||||||||||||||||||| |||||    | | ||||  | ||||||||||| || ||| | || || ||||| |||||  | |||||
ttctatgcatcgtttctcataatcttgg-ctagatgctatcta-tttcttggagtccgt-----gagcactactaacactttcgtttttggctcttgctccacacagACAAGGCCAAGATGGGAGAGAAGGAATGGTACTTCTTCACGCTGCGAGACCGAAAGTATCCTACGGGAATGCGCACAAACCGAGCCACCGAGGCCGGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggatttggtatttggggcgttatttctaatcttttattggacttgattgtacagAGAAAGCAAAGATGGGAGAGAAGGAATGGTATTTCTTTTGCCAGAGAGATAGGAAGTATCCTACAGGCATGAGAACGAATCGAGCTACCGAATCTGGATA
                    ttatttctaatctttt  TA-rich tract