1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttctaagctgttgattgatttcccactttgtatggccttctaagaaagaaacttgcatggttgcttgctcatgcatttcatggtggttgtcctgtgtcagGCCTGTCAATGTTGTTTGCTGGAGGCGTGCTATTTGTTTGGAGTTCATGGAGAAG
species | Vitis vinifera |
transcript | Vv08s0007g07540.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGGACGAGTTGGCTTGTTTCAGAGGTTTGGTCTTGGATCTCTCTTACAG GCCTGTCAATGTTGTTTGCTGGAGGCGTGCTATTTGTTTGGAGTTCATGGAEST: gi|122689451|gb|EC939681.1|EC939681
genomic: ATGGACGAGTTGGCTTGTTTCAGAGGTTTGGTCTTGGATCTCTCTTACAGgtctctccct ... cctgtgtcagGCCTGTCAATGTTGTTTGCTGGAGGCGTGCTATTTGTTTGGAGTTCATGGA
EST: ATGGACGAGTTGGCTTGTTTCAGAGGTTTGGTCTTGGATCTCTCTTACAG GCCTGTCAATGTTGTTTGCTGGAGGCGTGCTATTTGTTTGGAGTTCATGGAEST: gi|294966866|gb|GW839741.1|GW839741
genomic: ATGGACGAGTTGGCTTGTTTCAGAGGTTTGGTCTTGGATCTCTCTTACAGgtctctccct ... cctgtgtcagGCCTGTCAATGTTGTTTGCTGGAGGCGTGCTATTTGTTTGGAGTTCATGGA
EST: ATGGACGAGTTGGCTTGTTTCAGAGGTTTGGTCTTGGATCTCTCTTACAG GCCTGTCAATGTTGTTTGCTGGAGGCGTGCTATTTGTTTGGAGTTCATGGA
genomic: ATGGACGAGTTGGCTTGTTTCAGAGGTTTGGTCTTGGATCTCTCTTACAGgtctctccct ... cctgtgtcagGCCTGTCAATGTTGTTTGCTGGAGGCGTGCTATTTGTTTGGAGTTCATGGA
aagaaacttgcatggttgcttgctcatgcatttcatggtggttgtcctgtgtcagGCCTGTCAATGTTGTTTGCTGGAGGCGTGCTATTTGTTTGGAGTTCATGGAGAAG
ttgtcct CT-rich tract
atttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctaagctgttgattgatttcccactttgtatggccttctaagaaagaaacttgcatggttgcttgctcatgcatttcatggtggttgtcctgtgtcagGCCTGTCAATGTTGTTTGCTGGAGGCGTGCTATTTGTTTGGAGTTCATGGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - -ctgttga
- - - - - - - - - -ttcccac
- - - - - - - - - - - - - - - - -ggccttc
- - - - - - - - - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - gcatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggttg