Sequence
atgc intronic sequence ATGC exonic sequence...ttcaacatctgtatctgttaatgagtggtttaaaacattgggtttcagctagtaatatccagatttatacaaattttctgttgtcggatttatattgcagGTATCGTATACAAAGCGATAGAAAAGTAGCTGTCTGTAGTGTACATCCATCTGAGCATGCCACTTTGCAGTGCTTAGGTTGTGTGAAGGCCAAAATACCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g07020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G26620.2 (Glycine max), 3'ss of exon 1
ttcaacatctgtat-ctgttaatgagtggtttaaaaca--ttgggtttcagctagtaatatccagatttatacaaattttctgttgtcggatttatattgcagGTATCGTATACAAAGCGATAGAAAAGTAGCTGTCTGTAGTGTACATCCATCTGAGCATGCCACTTTGCAGTGCTTAGGTTGTGTGAAGGCCAAAATACCT
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---gatcccggtgtgctgcctttatacactttcaattaatctgatttagaaattggactttttacattgtttgactctatcctttggtcctcatttttggcagGTATCGTGTACAGAGTGATAAAAAAGTTGCTGTCTGTAGCATACATCCATCTGAGCAAGCCACCCTGCAATGCCTAGGCTGTGTTAAGGCCAAAATACCT
upper sequence: Vv08s0007g07020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G36550.1 (Glycine max), 3'ss of exon 1
ttcaacatctgtatctgttaatgagtggtttaaaacattgggtttcagctagtaatatccagatttatacaaattttctgttgtcggatt-tatattgcagGTATCGTATACAAAGCGATAGAAAAGTAGCTGTCTGTAGTGTACATCCATCTGAGCATGCCACTTTGCAGTGCTTAGGTTGTGTGAAGGCCAAAATACCT
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-atacactccctttatgtaagttttctcttgagctgacacagatctaaatattgaactttttgcatctatcatttgacactcatttggtcatctttggaagGTATCGTGTACAGAGTGATAAAAAGGTTGCTGTTTGTAGTGTACATCCTTCTGAGCAGGCCGCACTGCAGTGCCTAGGTTGTGTAAAGGCTAAAATACCT
upper sequence: Vv08s0007g07020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G15980.2 (Glycine max), 3'ss of exon 1
-ttcaacatctgtatctgttaatgagtggtttaaaacattgggtttcagctagtaatatccagatttatacaaattttctgttgtcggatttatattgcagGTATCGTATACAAAGCGATAGAAAAGTAGCTGTCTGTAGTGTACATCCATCTGAGCATGCCACTTTGCAGTGCTTAGGTTGTGTGAAGGCCAAAATACCT
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atcccaagtatgccgccttta-tacactttctattaatctgatttagaaattggactttttacattgtttgactctatcctttggccctcatttttggcagGTATCGTGTACAGAGTGATAAAAAAGTTGCTGTATGTAGCATACATCCATCAGAGCAAGCCACCCTGCAATGCCTAGGCTGTGTTAAGGCCAAAATACCT
upper sequence: Vv08s0007g07020.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA19G39210.2 (Glycine max), 3'ss of exon 1
-ttcaacatctgtatctgttaatgagtggtttaaaacattgggtttcagctagtaatatccagatttatacaaattttctgttgtcggatt-tatattgcagGTATCGTATACAAAGCGATAGAAAAGTAGCTGTCTGTAGTGTACATCCATCTGAGCATGCCACTTTGCAGTGCTTAGGTTGTGTGAAGGCCAAAATACCT
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atacattgcctttat--gtaagttttctgctgagctgatgcagatctaaatattgaactttttgcatctatcatttgacactcgtttggtcatctttggaagGTATCGTGTACAGAGTGATAAAAAGGTTGCTGTTTGTAGTGTACATCCTTCTGAGCCGGCCACACTGCAGTGCCTAGGTTGTGTAAAGTCTAAAATACCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110685768|gb|EE062779.1|EE062779EST: GATGTGCCGGAGTCTGCCCCAATCGAAGGCCACTTTTTGAGGTATAAGTG GTATCGTATACAAAGCGATAGAAAAGTAGCTGTCTGTAGTGTACATCCATC
genomic: GATGTGCCGGAGTCTGCCCCAATCGAAGGCCACTTTTTGAGGTATAAGTGgtaagtaata ... tatattgcagGTATCGTATACAAAGCGATAGAAAAGTAGCTGTCTGTAGTGTACATCCATC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cagctagtaatatccagatttatacaaattttctgttgtcggatttatattgcagGTATCGTATACAAAGCGATAGAAAAGTAGCTGTCTGTAGTGTACATCCATCTGAGCATGCCACTTTGCAGTGCTTAGGTTGTGTGAAGGCCAAAATACCT
agatttatacaaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttcaacatctgtatctgttaatgagtggtttaaaacattgggtttcagctagtaatatccagatttatacaaattttctgttgtcggatttatattgcagGTATCGTATACAAAGCGATAGAAAAGTAGCTGTCTGTAGTGTACATCCATCTGAGCATGCCACTTTGCAGTGCTTAGGTTGTGTGAAGGCCAAAATACCT
- caacatc
- - - - - - - - - - -tgagtgg
- - - - - - - - - - - - - - - -aaaacat
- - - - - - - - - - - - - - - - - - - - - -ttcagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacaaa