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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cattatgaatccaatcttgtatttttggttcattgctgtctgcttcaattcaatttatgaccatatttctgtttggctttggtgcatgttcataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTGCAACCTTCAAGGTGCACTGAGGAATTCCGTCTGAGGAAGTTGAAGAATG

Basic information

species Vitis vinifera
transcript Vv08s0007g07010.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g07010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os10g32820.1 (Oryza sativa), 3'ss of exon 1
cattatgaatccaatcttgtatttttggttcattgctgtctgcttcaattcaatttatga--ccatatttctgtttggct--ttggtgcatgttcataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTGCAACCTTCAAGGTGCACTGAGGAATTCCGTCTGAGGAAGTTGAAGAATG
    |||  |    |   ||  | | | |   | |   || |  | | || ||||| |||   ||| | |||||||  ||  ||| |   |  ||       |||| || ||| | ||||||| |||| |||||||||| ||||||||||||||||| || || |||||||||||||| ||||| ||||||||| | ||||| |
---catgtgtaatgttcagtcatgtggatatgtagtcttcgggatta-tttaatttttgaaatcatgtatctgttttactgattgtttgttaatctcttggtagGTTGGGAACCGCATTATCAGGAAGAGGATCCATGTCCGTGTGGAGCATGTGCAGCCATCCAGGTGCACTGAGGAGTTCCGCCTGAGGAAGATCAAGAACG

upper sequence: Vv08s0007g07010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os03g04750.1 (Oryza sativa), 3'ss of exon 1
cattatgaatccaatcttgtatttttggttcattgctgtctgcttcaattcaatttatgaccatatttctgtttggctttggtg--catgttcataatc--cagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTGCAACCTTCAAGGTGCACTGAGGAATTCCGTCTGAGGAAGTTGAAGAATG
 ||| |  |    | | |  | | |||  |  |     ||   |     ||  |   |||   | |  |   ||  | |||  |    ||||     ||  ||||| |||||| | || |||| |||| |||||||||| |||||||||||||| || || || |||||||| |||||  |||| ||||||||  | ||||| |
-attttagaatggaacatcaaatattgagtattgaacatcaaatagggctcgctacttga---tgtggcaacttcacattgaagactctgttttctgtcatcagGTCGGTAACCGCATCATCAGGAAGAGGATCCATGTCCGTGTGGAGCATGTCCAGCCATCCAGGTGCACCGAGGAGCTCCGCCTGAGGAAAATCAAGAACG

upper sequence: Vv08s0007g07010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G026216_T01 (Zea mays), 3'ss of exon 1
cattatgaatccaatcttgtatttttggttcattgctgtctgcttcaat---tcaatttatgaccatatttctgtttggctttggtg-catgttcataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTGCAACCTTCAAGGTGCACTGAGGAATTCCGTCTGAGGAAGTTGAAGAATG
 ||  || |   | | |  | | | | ||    || | ||      |||   | ||| ||||   |  ||  |  | |  | || |  | ||||     | ||||||  |    | || |||| |||||| |||||||| || |||||||||||||| || ||  | ||||| || || ||||| ||||||||| |||||||||
tatgctggacatattatgctctgtgtagt--ggtgatatcaatgataatggcttaatctatgtgtaagttctt--tagattctgataacttgttatcttttcagGTGAATGGTCGCATCATCAGGAAGCGTATCCATGTCCGCGTGGAGCATGTGCAGCCATCCCGCTGCACAGAAGAGTTCCGCCTGAGGAAGGTGAAGAATG

upper sequence: Vv08s0007g07010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G089421_T01 (Zea mays), 3'ss of exon 1
cattatgaatccaatcttgtatttttggttcattgctgtctgcttcaattcaatttat---gaccatatttc--tgtttggctttggtgcatgttcataa-tccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTGCAACCTTCAAGGTGCACTGAGGAATTCCGTCTGAGGAAGTTGAAGAATG
      ||| | |  ||||   |     ||  |||  |  ||  | || |  || ||    |||   | | |  ||||     |||    ||  |  |   || ||||   |  | | || |||| ||||||||||||||| || |||||||||||||| || ||  | ||||| ||||| |||||  |||||||    |||||||
------gaaacaacccttgacatgcgtattttttgtggcatgagttaagtgcatctaattagactgaactgccatgttaacacttgacctattctggtgtctctagGTTAATGGCCGCATCATCAGGAAGCGGATCCATGTCCGCGTGGAGCATGTGCAGCCCTCCCGTTGCACGGAGGAGTTCCGCTTGAGGAAAGCCAAGAATG

upper sequence: Vv08s0007g07010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G149257_T01 (Zea mays), 3'ss of exon 1
cattatgaatccaatcttgtatttttggttcattgctgtctgcttcaattcaattta-----tgaccatatttctgtttggctttggtgcatgttcataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTGCAACCTTCAAGGTGCACTGAGGAATTCCGTCTGAGGAAGTTGAAGAATG
  | |||   ||  |    | | |||  ||| ||      |  | ||| |  ||  |     | ||| |  |  | |||||||||      ||       |  ||||   |  | | || |||| |||||| |||||||| ||||||||||||||||| || ||  | ||||| ||||| |||||  |||||||    ||||| |
agtgatggtgcccttgacttgtctttttttcgttatgagttaatgcaactatatggactgattcaccgtggtaatatttggctttttctggtgcc-----tttagGTTAATGGCCGCATCATCAGGAAGCGTATCCATGTCCGTGTGGAGCATGTGCAGCCCTCCCGTTGCACAGAGGAGTTCCGCTTGAGGAAAGCCAAGAACG

upper sequence: Vv08s0007g07010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA19G39240.1 (Glycine max), 3'ss of exon 1
cattatgaatccaat-cttgtatttttggttcat-tgctgtctgcttcaattcaatttatgaccatatttctgtttggctttggtgcatgttcataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTGCAACCTTCAAGGTGCACTGAGGAATTCCGTCTGAGGAAGTTGAAGAATG
  ||  |  || |    || ||| |     || | ||    |       ||| | ||   ||  || |||   |     |    ||  || |  | || ||||| || ||||| ||||| | |||| |||| |||||||| || ||||||||    |||||||||||||||||||| ||||| || |||||| | |||||||
--tttagtttctagggtttttatgtcaaactcttgtgtatgccaaccttattgatttggggattatgttttgttgaaattactttgtgtgatgttcattcagGTTGGCAACAGAATTATAAGGAAGAGGATTCATGTGCGGGTAGAGCATGTTATGCCTTCAAGGTGCACTGAGGAGTTCCGCCTCAGGAAGATTAAGAATG

upper sequence: Vv08s0007g07010.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G36560.1 (Glycine max), 3'ss of exon 1
----cattatgaatccaatcttgtatttttggttcattgctgtctgcttcaattcaatttatgaccatatttctgtttggctttggtgcatgttcataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTGCAACCTTCAAGGTGCACTGAGGAATTCCGTCTGAGGAAGTTGAAGAATG
         ||  |  | | | || | |  ||||   || ||| ||| ||  || | |||  ||  ||  || | ||    ||   |     |   | || ||||| || ||||| || || | |||| |||| || |||||||||||||||||    || ||||||||||||||||| ||||| || |||||| | |||||||
ttctgcccgtgtgttaattttagtttctagggttttatg-tgtatgcctcg-ttgattttggga--atggttttattgaaattactttttgatgtttcattcagGTCGGCAACAGAATCATAAGGAAGAGGATTCACGTGCGTGTGGAGCATGTTATGCCATCAAGGTGCACTGAGGAGTTCCGCCTTAGGAAGATCAAGAATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349830713|gb|FQ417011.1|FQ417011
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351034341|gb|FQ448138.1|FQ448138
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351023127|gb|FQ432510.1|FQ432510
EST:     AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|56408123|gb|CX016375.1|CX016375
EST:     AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351028346|gb|FQ427242.1|FQ427242
EST:     AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|349826881|gb|FQ418972.1|FQ418972
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGCG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|352782720|gb|FQ476800.1|FQ476800
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351024157|gb|FQ423580.1|FQ423580
EST:     AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|30302373|gb|CB979167.1|CB979167
EST:     AGGTCTGGAATGTTGCTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|34542400|gb|CF510632.1|CF510632
EST:     AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|33407388|gb|CF213015.1|CF213015
EST:     AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351034491|gb|FQ448167.1|FQ448167
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|110397183|gb|EC962907.1|EC962907
EST:     AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|110376496|gb|EC941561.1|EC941561
EST:     AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|110382609|gb|EC946919.1|EC946919
EST:     AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|110724750|gb|EE100861.1|EE100861
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351027698|gb|FQ446865.1|FQ446865
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|34416161|gb|CF414915.1|CF414915
EST:     GTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGCATCCATGTGCGTGTGGAGCATGTG
genomic: GTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|22014561|gb|BQ799595.1|BQ799595
EST:     AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|110374091|gb|EC938621.1|EC938621
EST:     AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|33406947|gb|CF212574.1|CF212574
EST:     GGTGNTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: GGT-CTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351017657|gb|FQ436010.1|FQ436010
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351016348|gb|FQ446208.1|FQ446208
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351012693|gb|FQ430256.1|FQ430256
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGACGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351013899|gb|FQ434051.1|FQ434051
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|110729555|gb|EE105623.1|EE105623
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351040651|gb|FQ438195.1|FQ438195
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351030719|gb|FQ438557.1|FQ438557
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|110722098|gb|EE098041.1|EE098041
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|110405356|gb|EC970897.1|EC970897
EST:     AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351028716|gb|FQ433146.1|FQ433146
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|30302305|gb|CB979099.1|CB979099
EST:     AGGTCTGGAATGTTGCTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351026963|gb|FQ436616.1|FQ436616
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|349825339|gb|FQ418060.1|FQ418060
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAA                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351030751|gb|FQ438589.1|FQ438589
EST:     AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351024384|gb|FQ423807.1|FQ423807
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|110732419|gb|EE107687.1|EE107687
EST:     AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|110368349|gb|EC932323.1|EC932323
EST:     AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351014880|gb|FQ438080.1|FQ438080
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|110687409|gb|EE064793.1|EE064793
EST:     AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351041340|gb|FQ447467.1|FQ447467
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|34542490|gb|CF510722.1|CF510722
EST:     AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351043717|gb|FQ431070.1|FQ431070
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351015326|gb|FQ445610.1|FQ445610
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|77581482|gb|DV219676.1|DV219676
EST:     AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351028304|gb|FQ427200.1|FQ427200
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351028490|gb|FQ444771.1|FQ444771
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|30297819|gb|CB974613.1|CB974613
EST:     AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|33407297|gb|CF212924.1|CF212924
EST:     AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|349825704|gb|FQ421803.1|FQ421803
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351029223|gb|FQ435423.1|FQ435423
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351033560|gb|FQ447719.1|FQ447719
EST:     AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|110730066|gb|EE106718.1|EE106718
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|351026934|gb|FQ436587.1|FQ436587
EST:     AGGTCTGGAACGTTACCAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
EST: gi|71872545|gb|DT021600.1|DT021600
EST:     AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAG                         GTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG
genomic: AGGTCTGGAACGTTACTAAGCGCGCCATCGGCGTCGAAGTAAACAAGCAGgtatccttct ... cataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caattcaatttatgaccatatttctgtttggctttggtgcatgttcataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTGCAACCTTCAAGGTGCACTGAGGAATTCCGTCTGAGGAAGTTGAAGAATG
      aatttatga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cattatgaatccaatcttgtatttttggttcattgctgtctgcttcaattcaatttatgaccatatttctgtttggctttggtgcatgttcataatccagGTGGGTAACAGGATTATCAAGAAGCGGATCCATGTGCGTGTGGAGCATGTGCAACCTTCAAGGTGCACTGAGGAATTCCGTCTGAGGAAGTTGAAGAATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - -aatccaa
- - - - - - - - - - - - - - - cattgct
- - - - - - - - - - - - - - - - - - - -ctgcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgtt