Sequence
atgc intronic sequence ATGC exonic sequence...ctaggaagattcattaataagttgctttttctctttccagatattgtcctgtttttataggattctgattgatggttatttttcctttgtttgatagcagTAACTACAGTTGATTCTGGTAGCAAGGCCCTTGAATTTCTGGGTTTGCATGAAAATGACCCAAACACACCTTCCGTTTCTCCAAACAGTCATCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g05390.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G28570.1 (Glycine max), 3'ss of exon 1
----------ctagga-agattcattaataagttgctttttctctttccagatattgtcctgtttttataggattctgattgatggttatttttcctttgttt-gatagcagTAACTACAGTTGATTCTGGTAGCAAGGCCCTTGAATTTCTGGGTTTGCATGAAAATGAC---------CCAAACACACCTTCCGTTTCTCCAAACAGTCATCAG
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gtacaatcttttaggccaaacacaccaa-aatctgagagaaaaatttg-atctttattctttcttatttactattttgcctgataagtagaacccttttttctcaatggcagTTACTACAGTTGATTCTGGTAGCAAGGCTTTAGAGTTTCTGGGGTTGCGTGAGAATGATGAGAGCAATCCAAGTATACCATCTGTTTGTCCCAACAACCA----
upper sequence: Vv08s0007g05390.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA19G31320.2 (Glycine max), 3'ss of exon 1
----------------ctaggaagattcattaataagttgctttttctctttccagatattgtcctgtttttataggattctgattgatggttatttttcctttgttt--gatagcagTAACTACAGTTGATTCTGGTAGCAAGGCCCTTGAATTTCTGGGTTTGCATGAAAATGACCCAAACACACCTTCCGTTTCTCCAAACAGTCATCAG
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gtacaatcttttagaccaaacaccaaaatctgagagaaaaatttgttttttttcatttcttatttactatcttta---tcttgtctgataagaagGACCCTTTTGTTCTCAATGGCAGTTACTACAGTTGATTCTGGTAGCAAGGCTTTAGAGTTTCTGGGGTTGTGTGAGAATGATGAGAGCAACCCAAGTACA------------------
upper sequence: Vv08s0007g05390.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA19G31320.3 (Glycine max), 3'ss of exon 1
----------------ctaggaagattcattaataagttgctttttctctttccagatattgtcctgtttttataggattctgattgatggttatttttcctttgttt--gatagcagTAACTACAGTTGATTCTGGTAGCAAGGCCCTTGAATTTCTGGGTTTGCATGAAAATGA---------CCCAAACACACCTTCCGTTTCTCCAAACAGTCATCAG
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gtacaatcttttagaccaaacaccaaaatctgagagaaaaatttgttttttttcatttcttatttactatcttta---tcttgtctgataagaaggacccttttgttctcaatggcagTTACTACAGTTGATTCTGGTAGCAAGGCTTTAGAGTTTCTGGGGTTGTGTGAGAATGATGAGAGCAACCCAAGTACACCATATGTTTGTCCCAACAACCA---- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtcctgtttttataggattctgattgatggttatttttcctttgtttgatagcagTAACTACAGTTGATTCTGGTAGCAAGGCCCTTGAATTTCTGGGTTTGCATGAAAATGACCCAAACACACCTTCCGTTTCTCCAAACAGTCATCAG
ttatttttcctttgtt CT-rich tract
tttttata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctaggaagattcattaataagttgctttttctctttccagatattgtcctgtttttataggattctgattgatggttatttttcctttgtttgatagcagTAACTACAGTTGATTCTGGTAGCAAGGCCCTTGAATTTCTGGGTTTGCATGAAAATGACCCAAACACACCTTCCGTTTCTCCAAACAGTCATCAG
- aggaaga
- - - - - - - - - - - - - - - -tctttcc
- - - - - - - - - - - - - - - - - - - - - - - -cctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgattg