1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttaagaaagatttctatctttcctgccatcttgatgctgagataataatactgtttttatgttgcagatgaattaactctatattttcattcatgtgcagAGGTAGCTTCACTGCAGGCGAGGGCGATGGTTATTCAGTATGGAGAATATGGAAATTAATGGTGGTAATCCTTGTTCCAATGAAAAGTTGCCCTCAGAGG
species | Vitis vinifera |
transcript | Vv08s0007g04960.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGAGGCCTCTTTCACATTCAACACTGTCGAAAGCGTAAACGAAG AGGTAGCTTCACTGCAGGCGAGGGCGATGGTTATTCAGTATGGAGAATATGEST: gi|110691149|gb|EE068923.1|EE068923
genomic: CTGAGGCCTCTTTCACATTCAACACTGTCGAAAGCGTAAACGAAGgtctgacttc ... tcatgtgcagAGGTAGCTTCACTGCAGGCGAGGGCGATGGTTATTCAGTATGGAGAATATG
EST: GTGGACTGAGGCCTCTTTCACATTCAACACTGTCGAAAGCGTAAACGAAG AGGTAGCTTCACTGCAGGCGAGGGCGATGGTTATTCAGTATGGAGAATATG
genomic: GTGGACTGAGGCCTCTTTCACATTCAACACTGTCGAAAGCGTAAACGAAGgtctgacttc ... tcatgtgcagAGGTAGCTTCACTGCAGGCGAGGGCGATGGTTATTCAGTATGGAGAATATG
taatactgtttttatgttgcagatgaattaactctatattttcattcatgtgcagAGGTAGCTTCACTGCAGGCGAGGGCGATGGTTATTCAGTATGGAGAATATGGAAATTAATGGTGGTAATCCTTGTTCCAATGAAAAGTTGCCCTCAGAGG
aattaac putative branch site (score: 2)
ttttcattc putative PPT
aattaactctatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaagaaagatttctatctttcctgccatcttgatgctgagataataatactgtttttatgttgcagatgaattaactctatattttcattcatgtgcagAGGTAGCTTCACTGCAGGCGAGGGCGATGGTTATTCAGTATGGAGAATATGGAAATTAATGGTGGTAATCCTTGTTCCAATGAAAAGTTGCCCTCAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- -agaaaga
- - - - - - - - - - tcctgcc
- - - - - - - - - - - - - - - - gatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcagat