Sequence
atgc intronic sequence ATGC exonic sequence...aaaattagaaagcaaaaccatgccattcccagtctgaattggccctaaggtttgctatttcattaatggatgagaaactgaggaataactttggttgcagATTGCGAGTGGGTATGCTGATGGTAGTATAAGAATTTGGGATTGTGACAAAGGAACTTGTGTGACCACATTGAATGGACATAAAGGGGCTGTGACTGCTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g04690.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA03G34360.1 (Glycine max), 3'ss of exon 1
aaaattagaaagcaaaaccatgccattcccagtctgaattggccctaaggtttgctatttcattaatggatgagaaactgaggaataactttggttgcagATTGCGAGTGGGTATGCTGATGGTAGTATAAGAATTTGGGATTGTGACAAAGGAACTTGTGTGACCACATTGAATGGACATAAAGGGGCTGTGACTGCTC
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gtaattatcgctgtagtcaccgtcgaatctcgattgtgtaaacgtgaa--ttcgcggtttccttaaacggttt----cttatga-----ttgcgttgcagATTGCTAGTGGTTACGGTGATGGTAGCATAAGGATTTGGGACTCTGATAAAGGAACGTGTGAGACTACGTTGAATGGACACAAGGGAGCTGTCACTGCTC
upper sequence: Vv08s0007g04690.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G21540.1 (Arabidopsis thaliana), 3'ss of exon 1
-------------------------------------------------------------------------------aaaattagaaagcaaaaccatgcc---attcccagtctgaattggc----cctaaggtttgctatttcattaa-----tggatgagaa-actgaggaataactttggttg------cagATTGCGAGTGGGTATGCTGATGGTAGTATAAGAATTTGGGATTGTGACAAAGGAACTTGTGTGACCACATTGAATGGACATAAAGGGGCTGTGACTGCTC
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gtacttacttttgttcgttttttattttgatttgcttaatgacttgaaagttgttcactttgtaatctatttggtagctaaatagagctagaaatgtcgtatttgaattttaagctagaattaataatattcatggtgctttgtactattgagtatctgaaggagtttgctgttgtttgattctgtgtgataaaccagGTGGCAGTTGGGTATGCAGATGGGAGCATAAGAATATGGGATACTGAGAAAGGAACTTGTGAGGTTAATTTTAATAGCCATAAGGGGGCGGTGACTGCTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taaggtttgctatttcattaatggatgagaaactgaggaataactttggttgcagATTGCGAGTGGGTATGCTGATGGTAGTATAAGAATTTGGGATTGTGACAAAGGAACTTGTGTGACCACATTGAATGGACATAAAGGGGCTGTGACTGCTC
gaataac putative branch site (score: 2)
tatttcattaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaattagaaagcaaaaccatgccattcccagtctgaattggccctaaggtttgctatttcattaatggatgagaaactgaggaataactttggttgcagATTGCGAGTGGGTATGCTGATGGTAGTATAAGAATTTGGGATTGTGACAAAGGAACTTGTGTGACCACATTGAATGGACATAAAGGGGCTGTGACTGCTC
aaaatta
- - - - - - caaaacc
- - - - - - - - - - - ccattcc
- - - - - - - - - - - - - - - - - - - - - ccctaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaataa