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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctctctcttgcggtttccttctgtggtttactctgttttagtaaaattttctgtttagtttcggttttgatttttttgtctttgtttcatacatgtcaacagGTTTACCAGCTCTCAATTGGAGCTGCATGTGGACTCTCATGGCCCTCCGATCGTATCATAATTCAAGTCCTGGACGATTCAACCGACCCCACAATCAAG

Basic information

species Vitis vinifera
transcript Vv08s0007g03990.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g03990.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ35401 (Selaginella moellendorffii), 3'ss of exon 1
gtgctctctcttgcggtttccttctgtggtttactctgt-tttagtaaaattttctgtttagttt--cggttttgatttttttgtctttgtttcatacatgtcaacagGTTTACCAGCTCTCAATTGGAGCTGCATGTGGACTCTCATGGCCCTCCGATCGTATCATAATTCAAGTCCTGGACGATTCAACCGACCCCACAATCAAG
                         ||| | || ||  |   |||   |   |   | |  |  |  ||   || |  ||  | | || || |      |     ||||| ||||||||||||||||| ||||| ||||| ||||| ||||| || || || || ||  | ||| ||||||||||||| ||||||| ||| ||||||
-------------------------gtgatctattcgatgcctagcccaccctctcgctgtggctaacgaagtttagcttggttttttggtctggattctcctcccagGTGTACCAGCTCTCAATTGGCGCTGCTTGTGGCCTCTCGTGGCCTTCGGACCGCATTATTGTGCAAATCCTGGACGATTCGACCGACCTCACCATCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctgtttagtttcggttttgatttttttgtctttgtttcatacatgtcaacagGTTTACCAGCTCTCAATTGGAGCTGCATGTGGACTCTCATGGCCCTCCGATCGTATCATAATTCAAGTCCTGGACGATTCAACCGACCCCACAATCAAG
                 ttttgat  putative branch site (score: 4)
                 ttttgatttttttgt  TA-rich tract