1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gaagaatttgtactatgcttttttttttttttttcaaatctaatggtgggcagttgcagggtttctggattttcttgaattttaccttgtactttggcagGTATTCTGCATCTTTTGTATCCGAAAGTGAGATTCCACCTGACGAGTATATTCTAGAAATTGCTG
species | Vitis vinifera |
transcript | Vv08s0007g03250.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTTCTCTTGCTTTGATACTTCGGCTTGGGACGGGTGTTTTTGTTTCCGG GTATTCTGCATCTTTTGTATCCTAAAGCGAGATTCCACCTGACGAGTATATEST: gi|30253209|gb|CB970760.1|CB970760
genomic: GCTTCTCTTGCTTTGATACTTCGGCTTGGGACGGGTGTTTTTGTTTCCGGgtatggagtt ... actttggcagGTATTCTGCATCTTTTGTATCCGAAAGTGAGATTCCACCTGACGAGTATAT
EST: GCTTCTCTTGCTTTGATACTTCGGCTTGGGACGGGTGTTTTTGTTTCCGG GTATTCTGCATCTTTTGTATCCGAAAGTGAGATTCCACCTGACGAGTATATEST: gi|351019188|gb|FQ429348.1|FQ429348
genomic: GCTTCTCTTGCTTTGATACTTCGGCTTGGGACGGGTGTTTTTGTTTCCGGgtatggagtt ... actttggcagGTATTCTGCATCTTTTGTATCCGAAAGTGAGATTCCACCTGACGAGTATAT
EST: GTTTCTCTTGCTTTGATACTTCGGCTTGGGACGGGTGTTTTTGTTTCCGG GTATTCTGCATCTTTTGTATCCGAAAGTGAGATTCCACCTGACGGGTATATEST: gi|349829498|gb|FQ420030.1|FQ420030
genomic: GCTTCTCTTGCTTTGATACTTCGGCTTGGGACGGGTGTTTTTGTTTCCGGgtatggagtt ... actttggcagGTATTCTGCATCTTTTGTATCCGAAAGTGAGATTCCACCTGACGAGTATAT
EST: GTTTCTCTTGCTTTGATACTTCGGCTTGGGACGGGTGTTTTTGTTTCCGG GTATTCTGCATCTTTTGTATCCGAAAGTGAGATTCCACCTGACGGGTATATEST: gi|28959489|gb|CB339745.1|CB339745
genomic: GCTTCTCTTGCTTTGATACTTCGGCTTGGGACGGGTGTTTTTGTTTCCGGgtatggagtt ... actttggcagGTATTCTGCATCTTTTGTATCCGAAAGTGAGATTCCACCTGACGAGTATAT
EST: GCTTCTCTTGCTTTGATACTTCGGCTTGGGACGGGTGTTTTTGTTTCCGG GTATTCTGCATCTTTTGTATCCGAAAGTGAGATTCCACCTGACGAGTATATEST: gi|71855235|gb|DT004290.1|DT004290
genomic: GCTTCTCTTGCTTTGATACTTCGGCTTGGGACGGGTGTTTTTGTTTCCGGgtatggagtt ... actttggcagGTATTCTGCATCTTTTGTATCCGAAAGTGAGATTCCACCTGACGAGTATAT
EST: GCTTCTCTTGCTTTGATACTTCGGCTTGGGACGGGTGTTTTTGTTTCCGG GTATTCTGCATCTTTTGTATCCGAAAGTGAGATTCCACCTGACGAGTATATEST: gi|349811972|gb|FQ410769.1|FQ410769
genomic: GCTTCTCTTGCTTTGATACTTCGGCTTGGGACGGGTGTTTTTGTTTCCGGgtatggagtt ... actttggcagGTATTCTGCATCTTTTGTATCCGAAAGTGAGATTCCACCTGACGAGTATAT
EST: GCTTCTCTTGCTTTGATACTTCGGCTTGGGACGGGTGTTTTTGTTTCCGG GTATTCTGCATCTTTTGTATCCGAAAGTGAGATTCCACCTGACGAGTATAT
genomic: GCTTCTCTTGCTTTGATACTTCGGCTTGGGACGGGTGTTTTTGTTTCCGGgtatggagtt ... actttggcagGTATTCTGCATCTTTTGTATCCGAAAGTGAGATTCCACCTGACGAGTATAT
gtgggcagttgcagggtttctggattttcttgaattttaccttgtactttggcagGTATTCTGCATCTTTTGTATCCGAAAGTGAGATTCCACCTGACGAGTATATTCTAGAAATTGCTG
attttcttgaatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagaatttgtactatgcttttttttttttttttcaaatctaatggtgggcagttgcagggtttctggattttcttgaattttaccttgtactttggcagGTATTCTGCATCTTTTGTATCCGAAAGTGAGATTCCACCTGACGAGTATATTCTAGAAATTGCTG
- - - - - - ctatgct
- - - - - - - - - - - - - - - - - - - - - -tggtggg
- - - - - - - - - - - - - - - - - - - - - - - - - cagttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctgg