1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggatttgaaagttttctgggaatatagaatgtgtgttaaattgtgtattcacttatatcttcttacttttctgtgagattgaacaaatttttgtatgtagATTGGAGGATGGTTCTTGTGGACCAGAGGAACCATGGAAGATCAGCTGAGGTAGAAGGTTTATATCCACCTCATGACATTGTCAATGCTGCTCAAGATTT
species | Vitis vinifera |
transcript | Vv08s0007g03010.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTCTCCAGAAACCTCGCTGCCACGCTCTCTAATTCCTCTTCCTCATCTG ATTGGAGGATGGTTCTTGTGGACCAGAGGAACCATGGAAGATCAGCTGAGGEST: gi|27755232|gb|CB035987.1|CB035987
genomic: TTTCTCCAGAAACCTCGCTGCCACGCTCTCTAATTCCTCTTCCTCATCTGgtatttcaat ... ttgtatgtagATTGGAGGATGGTTCTTGTGGACCAGAGGAACCATGGAAGATCAGCTGAGG
EST: TTTCTCCAGAAACCTCGCTGCCACGCTCTCTAATTCCTCTTCCTCATCTG ATTGGAGGATGGTTCTTGTGGACCAGAGGAACCATGGAAGATCAGCTGAGGEST: gi|30127222|gb|CB912561.1|CB912561
genomic: TTTCTCCAGAAACCTCGCTGCCACGCTCTCTAATTCCTCTTCCTCATCTGgtatttcaat ... ttgtatgtagATTGGAGGATGGTTCTTGTGGACCAGAGGAACCATGGAAGATCAGCTGAGG
EST: CTCTTCCTCATCTG ATTGGAGGATGGTTCTTGTGGACCAGAGGAACCATGGAAGATCAGCTGAGGEST: gi|30137958|gb|CB923296.1|CB923296
genomic: CTCTTCCTCATCTGgtatttcaat ... ttgtatgtagATTGGAGGATGGTTCTTGTGGACCAGAGGAACCATGGAAGATCAGCTGAGG
EST: CTCTTCCTCATCTG ATTGGAGGATGGTTCTTGTGGACCAGAGGAACCATGGAAGATCAGCTGAGGEST: gi|156736408|gb|EV240529.1|EV240529
genomic: CTCTTCCTCATCTGgtatttcaat ... ttgtatgtagATTGGAGGATGGTTCTTGTGGACCAGAGGAACCATGGAAGATCAGCTGAGG
EST: TTTCTCCAGAAACCTCGCTGCCACGCTCTCTAATTCCTCTTCCTCATCTG ATTGGAGGATGGTTCTTGTGGACCAGAGGAACCATGGAAGATCAGCTGAGG
genomic: TTTCTCCAGAAACCTCGCTGCCACGCTCTCTAATTCCTCTTCCTCATCTGgtatttcaat ... ttgtatgtagATTGGAGGATGGTTCTTGTGGACCAGAGGAACCATGGAAGATCAGCTGAGG
tattcacttatatcttcttacttttctgtgagattgaacaaatttttgtatgtagATTGGAGGATGGTTCTTGTGGACCAGAGGAACCATGGAAGATCAGCTGAGGTAGAAGGTTTATATCCACCTCATGACATTGTCAATGCTGCTCAAGATTT
ttcttac putative branch site (score: 2)
tttttgt putative PPT
attgaacaaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatttgaaagttttctgggaatatagaatgtgtgttaaattgtgtattcacttatatcttcttacttttctgtgagattgaacaaatttttgtatgtagATTGGAGGATGGTTCTTGTGGACCAGAGGAACCATGGAAGATCAGCTGAGGTAGAAGGTTTATATCCACCTCATGACATTGTCAATGCTGCTCAAGATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - tttctgg
- - - - - - - - - - - - - gaatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaaa