1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tcagttttctcggaaccgaatttacttttgttttggtcatttttctatttcatatttacttatttattattttttgaaaagtactgggttttgtttgcagGAGCGTTGGCAAGCGGATAAAAAGTGCCTTATTATGGGTCATCACTACAGCCATCGTCTGTGCTCTTGTGCTTGGCATTCTATATG
species | Vitis vinifera |
transcript | Vv08s0007g02270.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCTTTGTTATTCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAA GAGCGTTGGCAAGCGGATAAAAAGTGCCTTATTATGGGTCATCACTACAGCEST: gi|161708327|gb|FC057028.1|FC057028
genomic: TTCTTTGTTATTCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtcggtactt ... ttgtttgcagGAGCGTTGGCAAGCGGATAAAAAGTGCCTTATTATGGGTCATCACTACAGC
EST: TTCTTTGTTATTCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAA GAGCGTAGGCAAGCGGATAAAAAGTGCCTTATTATGGGTCATCACTACAGCEST: gi|110730406|gb|EE107450.1|EE107450
genomic: TTCTTTGTTATTCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtcggtactt ... ttgtttgcagGAGCGTTGGCAAGCGGATAAAAAGTGCCTTATTATGGGTCATCACTACAGC
EST: TTCTTTGTTATTCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAA GAGCGTTGGCAAGCGGATAAAAAGTGCCTTATTATGGGTCATCACTACAGCEST: gi|161716762|gb|FC065585.1|FC065585
genomic: TTCTTTGTTATTCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtcggtactt ... ttgtttgcagGAGCGTTGGCAAGCGGATAAAAAGTGCCTTATTATGGGTCATCACTACAGC
EST: TTCTTTGTTATTCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAA GAGCGTTGGCAAGCGGATAAAAAGTGCCTTATTATGGGTCATCACTACAGCEST: gi|110372187|gb|EC936337.1|EC936337
genomic: TTCTTTGTTATTCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtcggtactt ... ttgtttgcagGAGCGTTGGCAAGCGGATAAAAAGTGCCTTATTATGGGTCATCACTACAGC
EST: TTCTTTGTTATTCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAA GAGCGTTGGCAAGCGGATAAAAAGTGCCTTATTATGGGTCATCACTACAGCEST: gi|110708808|gb|EE086769.1|EE086769
genomic: TTCTTTGTTATTCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtcggtactt ... ttgtttgcagGAGCGTTGGCAAGCGGATAAAAAGTGCCTTATTATGGGTCATCACTACAGC
EST: TTCTTTGTTATTCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAA GAGCGTTGGCAAGCGGATAAAAAGTGCCTTATTATGGGTCATCACTACAGC
genomic: TTCTTTGTTATTCCCTTCGCCATGTTCTACTACGAAGGCGACCAGGACAAgtcggtactt ... ttgtttgcagGAGCGTTGGCAAGCGGATAAAAAGTGCCTTATTATGGGTCATCACTACAGC
tatttcatatttacttatttattattttttgaaaagtactgggttttgtttgcagGAGCGTTGGCAAGCGGATAAAAAGTGCCTTATTATGGGTCATCACTACAGCCATCGTCTGTGCTCTTGTGCTTGGCATTCTATATG
ttttgttt CT-rich tract
atatttacttatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcagttttctcggaaccgaatttacttttgttttggtcatttttctatttcatatttacttatttattattttttgaaaagtactgggttttgtttgcagGAGCGTTGGCAAGCGGATAAAAAGTGCCTTATTATGGGTCATCACTACAGCCATCGTCTGTGCTCTTGTGCTTGGCATTCTATATG
- - - - - - -aaccgaa
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