Sequence
atgc intronic sequence ATGC exonic sequence...aatactcaaatcaatattgtgaaatggtcaaacagtggtatgaaatgggcgtttgatcctatgtttaatacgactgattttggcgtggaattgttcatagGCGGATGTAGTGTTGCGTGGATATTCTGGGTGGAACTCAAGGCGTGCTCTCCAAGTTCTGGACCAAGTGTTTCCAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g02260.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G43040.1 (Glycine max), 3'ss of exon 1
-------aatactcaaatcaata-ttgtgaaatggtcaaacagtggtatgaaatgggcgtttgatcctatgtttaatacgactgattttggcgtggaattgttcatagGCGGATGTAGTGTTGCGTGGATATTCTGGGTGGAACTCAAGGCGTGCTCTCCAAGTTCTGGACCAAGTGTTTCCAAAG
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atgccttagtttttgcaacgtcagtagaaagatgaactgaatttgggagcaataatacattggcaaatgattttaacctattcaacattggcatga-------cataGGTTGATATAGTTTTGCGAGGATATGCTGGTTGGAATTCAAGGCGTGCTCTGCAGGTTCTGGATAAAATCTTTCCTAA-
upper sequence: Vv08s0007g02260.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G18210.2 (Glycine max), 3'ss of exon 1
-----aatactcaaatcaatattgtgaaatggtcaaacagtggtatgaaatgggcgtttgatcctatgtttaatacgactgattttggcgtggaattgttcatagGCGGATGTAGTGTTGCGTGGATATTCTGGGTGGAACTCAAGGCGTGCTCTCCAAGTTCTGGACCAAGTGTTTCCAAAG
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cggccagtaattgaatgag-ataattacctttatatatgcctttatgggatgcat-tatgatagt-caatgagtttaacttattacactttgacatga--catagGCGGATATAATTCTGCGAGGATACTCTGGTTGGAATTCAAGGCGTGCTGTGCAAGTTCTGGATGAAATTTTCCCTAAG
upper sequence: Vv08s0007g02260.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G43070.1 (Glycine max), 3'ss of exon 1
----aatactcaaatcaatattgtgaaatggtcaaacagtggtatgaaatgggcgtttgatcctatgtttaatacgactgattttggcgtggaattgttcatagGCGGATGTAGTGTTGCGTGGATATTCTGGGTGGAACTCAAGGCGTGCTCTCCAAGTTCTGGACCAAGTGTTTCCAAAG-
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agccagtaattgaatgaa-ataattacttttatatatgcctttatgggatgcat-tacgatggt-caatgagtttaatttattacaccttgacatga--cataggCCGATATAATTCTGCGAGGATACTCTGGTTGGAATTCAAGGCGTGCTGTGCAAGTTCTGGATGAAATTTTCCCAAAGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110373489|gb|EC937731.1|EC937731EST: ACAGCAACCAAGGATGGGGCGCGATTCTCGCTGACCTCTACGCCCGTAAG GCGGATGTAGTGTTGCGTGGATATTCTGGGTGGAACTCAAGGCGTGCTCTC
genomic: ACAGCAACCAAGGATGGGGCGCGATTCTCGCTGACCTCTACGCCCGTAAGgtattcttct ... ttgttcatagGCGGATGTAGTGTTGCGTGGATATTCTGGGTGGAACTCAAGGCGTGCTCTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgggcgtttgatcctatgtttaatacgactgattttggcgtggaattgttcatagGCGGATGTAGTGTTGCGTGGATATTCTGGGTGGAACTCAAGGCGTGCTCTCCAAGTTCTGGACCAAGTGTTTCCAAAG
gactgat putative branch site (score: 3)
tatgtttaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatactcaaatcaatattgtgaaatggtcaaacagtggtatgaaatgggcgtttgatcctatgtttaatacgactgattttggcgtggaattgttcatagGCGGATGTAGTGTTGCGTGGATATTCTGGGTGGAACTCAAGGCGTGCTCTCCAAGTTCTGGACCAAGTGTTTCCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - -aaatcaa
- - - - - - - - - - - - - -tcaaaca
- - - - - - - - - - - - - - - - - - ggtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctatgt