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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccaagcggagggttagggtttatagtattggcattgttaagagggtacaagaattgccaattattggctgttgctaaatagtagggtgttgtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACAACTATCATGAATCAATGTTTTCCATGTTCAAGAGAATAAATG

Basic information

species Vitis vinifera
transcript Vv08s0007g01980.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g01980.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os04g56646.1 (Oryza sativa), 3'ss of exon 1
ccaagcggagggt-tagggtttatagtattggcattgttaagagggtacaagaattgccaattattggctgttgctaaatagtagggtg-ttgtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACAACTATCATGAATCAATGTTTTCCATGTTCAAGAGAATAAATG
    | | |  |  | |    |  |  ||| |   |||  ||    ||    | |  | | ||| ||  | ||     ||  || ||   |||  ||||||||||| |||||||| ||||||||||| || || || ||||| || || || || || || ||||| |||||||||||||||||||| || || |
tggcgtgaattgcgttgaacctgcacaattagatctgtggagttc-tattccagtgacgatttactgtat-ttatagcatgctatggcacttggttttgcagTGCCGTTTGAAGAGGATGACAAGGATCCGAGGATCTGGTTCCTCGATCATAATTACCACGAATCGATGTTTTCCATGTTCAAGAGGATCAACG

upper sequence: Vv08s0007g01980.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G061745_T03 (Zea mays), 3'ss of exon 1
ccaagcggagg-gttagggtttatagtattggcattgttaagagggtacaaga-attg-ccaattattggctgttgctaaatagtagggtgttgtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACAACTATCATGAATCAATGTTTTCCATGTTCAAGAGAATAAATG
 ||    ||    ||   ||  |  |     ||    || |   | |    ||  ||| ||      || ||  ||||||||       |    | ||||||||||| ||||| || ||||||||||| || || || ||||| ||||||||||| || || || |||||||| |||||||||||||| || ||||
-cagttagatctattgacgtggaatgcccgtgcggaattgattagatctgtgacgttgtcccgggggtgact--tgctaaatccgctacttgattttttgcagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCACGAGTCAATGTTCTCCATGTTCAAGAGGATTAATG

upper sequence: Vv08s0007g01980.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G368908_T02 (Zea mays), 3'ss of exon 1
ccaagcggagggttagggtttatagtattggcattgttaagagggtacaaga--attgccaattattggctgttgctaaatagtagggtgttgtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACAACTATCATGAATCAATGTTTTCCATGTTCAAGAGAATAAATG
 | |  |  | |    |       |     || |  || |   | |    ||   ||| |     |  |   ||||| |||         |  | |||| |||||| ||||| || ||||||||||| || || || ||||| ||||||||||| || |||||||| ||||| |||||||||||||| || || |
tctattgacgtggattgccacgctgctcatgcgtgattgattagatctgtgatcgttgtcccgggtgtgac-ttgctgaatc-cgctacttgttttttgtagTGCCGTTTGAGGAGGATGACAAGGATCCTAGGATCTGGTTCCTTGACCACAATTACCATGAATCGATGTTCTCCATGTTCAAGAGGATTAACG

upper sequence: Vv08s0007g01980.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G05780.1 (Arabidopsis thaliana), 3'ss of exon 1
ccaagcggagggttagggtttatagtattggcattgttaagagggtacaagaattgccaat-tattggctgttgctaa-atagtagggtgttgtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACAACTATCATGAATCAATGTTTTCCATGTTCAAGAGAATAAATG
      |      || ||    |   | | | |   |    |    |      |||   |  |||    |  || ||| ||  |    | |||  || | |||||||||||| || |||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||||||   ||||||||||||||| ||||
-tgcttgcttatctatggacactgtcactagaaacctctttaatagatggatgttgtttacatatgaattcgtgttaacatgttgacatcttgaatt-gtagTGCCCTTTGAGGAGGATGACAAAGACCCAAGCATCTGGTTTCTTGATCACAACTACCATGAGTCAATGTTCCACATGTTCAAGAGAATTAATG

upper sequence: Vv08s0007g01980.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G11270.2 (Arabidopsis thaliana), 3'ss of exon 1
--ccaagcggagggttagggtttatagtattggcattgttaagagggtacaagaattgccaat-tattggctgttgctaaatagtagggtgttgtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACAACTATCATGAATCAATGTTTTCCATGTTCAAGAGAATAAATG
           |         ||| | | |  ||||  | |  || |        || |      ||    ||||  | | |  | |  ||| || ||| ||||||| ||||| || |||||||| ||| ||||||||||||||||||| |||||||| || || || ||||||  ||||||||||||||| ||||
catttgattttgcacagtacattacactgtgagcatgttcataagtgcgttgttgttacttgcacatcacttgtt--tgactttttgtttgtggt-tttacagTGCCTTTTGAGGAGGATGACAAAGACACAAGCATATGGTTTCTTGATCACAACTACCACGAGTCGATGTTTCACATGTTCAAGAGAATTAATG

upper sequence: Vv08s0007g01980.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S197_115V6.1 (Physcomitrella patens), 3'ss of exon 1
ccaagcggagggttagggtttatagtattggcattgt-taagagggtacaagaattgccaattattggctgttgctaaatagtagggtgttgtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACAACTATCATGAATCAATGTTTTCCATGTTCAAGAGAATAAATG
   |    |   || |     | | || |  ||| |    | | |  |    | ||    | |       | |    |   | | ||   ||  |||  |||||||||||| ||||||||||||||  | |||||||||||  | |||||||||||||||||  | |||||   ||||||||||||||| || |
-ggactataaaattggaagaaaaaataataccatagggcgatatgaaattctattttgggactgaaaaacgatcgcgatggggatgggagtgattttttagTGCCCTTTGAGGAAGATGACAAGGATGCCAGCATATGGTTCTTGGACCACAACTATCATGAGACTATGTTCGACATGTTCAAGAGAATTAACG

upper sequence: Vv08s0007g01980.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ21414 (Selaginella moellendorffii), 3'ss of exon 1
ccaagcggagggttagggtttatagtattggcattgttaagagggtacaagaattgccaattattggctgttgctaaatagtagggtgttgtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACAACTATCATGAATCAATGTTTTCCATGTTCAAGAGAATAAATG
             || ||   ||  | | ||   | |  ||  |     |||||| |   ||    |  |   |   | | | |    |  |  ||||||| || |||||||| ||||||| |||||||||||| |||||| | || ||||||||||| ||| | ||||||   ||||||||| | || ||||
------------gtatggccgatt-tgtaggagatttcgaggag-----agaatttctggtttcctggggagtcgtgagaattgttcttccttcttgcagTACCGTTTGAAGAGGATGACAGGGACCCAAGCATTTGGTTTTTGGATCACAACTATCACGAAGCGATGTTTGATATGTTCAAGCGGATCAATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71862429|gb|DT011484.1|DT011484
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|71861116|gb|DT010171.1|DT010171
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|110689439|gb|EE065663.1|EE065663
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|30125091|gb|CB910430.1|CB910430
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|110697690|gb|EE074900.1|EE074900
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|37188068|gb|CF607419.1|CF607419
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|30297109|gb|CB973903.1|CB973903
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|37188648|gb|CF607997.1|CF607997
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|294965591|gb|GW837190.1|GW837190
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|71864815|gb|DT013870.1|DT013870
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|294967321|gb|GW836675.1|GW836675
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|110713466|gb|EE089412.1|EE089412
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|110711679|gb|EE088432.1|EE088432
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGGAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|71859938|gb|DT008993.1|DT008993
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|110687327|gb|EE064641.1|EE064641
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|37186349|gb|CF605702.1|CF605702
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|161712650|gb|FC062222.1|FC062222
EST:     ACTCGGTAGTTCTTTCAAAGGTACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|110718297|gb|EE094970.1|EE094970
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|71864932|gb|DT013987.1|DT013987
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|29783602|gb|CB349901.2|CB349901
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|18459292|gb|BM437570.1|BM437570
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|110690336|gb|EE067344.1|EE067344
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|33406603|gb|CF212230.1|CF212230
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|110401013|gb|EC967604.1|EC967604
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|71861505|gb|DT010560.1|DT010560
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|161710636|gb|FC059390.1|FC059390
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|161721407|gb|FC070435.1|FC070435
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
EST: gi|110712994|gb|EE088527.1|EE088527
EST:     ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAG                         TGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA
genomic: ACTCGGTAGTTCTTTCAAAGGAACTGTTGATGTCACTAACAGTTACGCAGgttcaattct ... gtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacaagaattgccaattattggctgttgctaaatagtagggtgttgtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACAACTATCATGAATCAATGTTTTCCATGTTCAAGAGAATAAATG
                          tgctaaa  putative branch site (score: 2)
                             taaatagta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ccaagcggagggttagggtttatagtattggcattgttaagagggtacaagaattgccaattattggctgttgctaaatagtagggtgttgtgtttgcagTGCCCTTTGAAGAAGATGACAAGGACCCAAGCATATGGTTTCTTGACCACAACTATCATGAATCAATGTTTTCCATGTTCAAGAGAATAAATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
ccaagcg
- - - - - - - - - - - - - - - - - - - - - - - acaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -ttgccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtgtt