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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagcctttttctctttctctatttctacccgaggtttagcttcggggtgttctttattttttagtttctttattttatttttcaattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATCAGTACGTGGGGAGAACCGGTTCTGTGATTCCCACCGCTTCGTTGGCTGG

Basic information

species Vitis vinifera
transcript Vv08s0007g01660.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352794482|gb|FQ481715.1|FQ481715
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351048065|gb|FQ441237.1|FQ441237
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351053876|gb|FQ441642.1|FQ441642
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351020062|gb|FQ445669.1|FQ445669
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351021536|gb|FQ429640.1|FQ429640
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|352790725|gb|FQ478273.1|FQ478273
EST:     GACCTTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351044344|gb|FQ452896.1|FQ452896
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351045291|gb|FQ451739.1|FQ451739
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351045205|gb|FQ451653.1|FQ451653
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|71863357|gb|DT012412.1|DT012412
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGGTGACAAAGAGAGCGAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|110378753|gb|EC943901.1|EC943901
EST:     GTTCCTTTTCTCTC--                         -AGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATCGAGTTCGTATC
genomic: GTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|349808089|gb|FQ402480.1|FQ402480
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|352795613|gb|FQ480201.1|FQ480201
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351048763|gb|FQ449631.1|FQ449631
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351035531|gb|FQ463376.1|FQ463376
EST:     GACATTCACAATGGAGGAGCAGC-AACCATGGAGGTTCCTTTTCTCTCAC                         AAGCGAAGAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|349829908|gb|FQ422221.1|FQ422221
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351029866|gb|FQ427706.1|FQ427706
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|349811075|gb|FQ406063.1|FQ406063
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAGTTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351035981|gb|FQ463826.1|FQ463826
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351032770|gb|FQ462484.1|FQ462484
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351017655|gb|FQ436008.1|FQ436008
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351048521|gb|FQ448795.1|FQ448795
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|352793956|gb|FQ479198.1|FQ479198
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351054618|gb|FQ456815.1|FQ456815
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|349809349|gb|FQ401117.1|FQ401117
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAGTTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351052098|gb|FQ455391.1|FQ455391
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|349822856|gb|FQ398243.1|FQ398243
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351037732|gb|FQ464173.1|FQ464173
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|352790396|gb|FQ478036.1|FQ478036
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351030436|gb|FQ432374.1|FQ432374
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351048751|gb|FQ449619.1|FQ449619
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|349808881|gb|FQ406731.1|FQ406731
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAGTTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351041805|gb|FQ456015.1|FQ456015
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351055637|gb|FQ452102.1|FQ452102
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351021640|gb|FQ430527.1|FQ430527
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351043817|gb|FQ452611.1|FQ452611
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351044690|gb|FQ443221.1|FQ443221
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|352794323|gb|FQ481554.1|FQ481554
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351046143|gb|FQ442521.1|FQ442521
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|161715662|gb|FC067792.1|FC067792
EST:     AGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGGTGACAAAGAGAGCGAAAGATTGAGTTCGTATC
genomic: AGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351026673|gb|FQ436326.1|FQ436326
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351035594|gb|FQ463439.1|FQ463439
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351052643|gb|FQ452555.1|FQ452555
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351043637|gb|FQ451568.1|FQ451568
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|71859994|gb|DT009049.1|DT009049
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGGTGACAAAGAGAGCGAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351031489|gb|FQ459746.1|FQ459746
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351041569|gb|FQ455785.1|FQ455785
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351056104|gb|FQ453566.1|FQ453566
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|349807832|gb|FQ402182.1|FQ402182
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAGTTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|351036969|gb|FQ459491.1|FQ459491
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
EST: gi|349807261|gb|FQ401253.1|FQ401253
EST:     GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAG                         AAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC
genomic: GACATTCACAATGGAGGAGCAGCAAACCATGGAGGTTCCTTTTCTCTCAGgtacagcctt ... aattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttcggggtgttctttattttttagtttctttattttatttttcaattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATCAGTACGTGGGGAGAACCGGTTCTGTGATTCCCACCGCTTCGTTGGCTGG
                                       tttttca  CT-rich tract
           ttctttattttttagt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacagcctttttctctttctctatttctacccgaggtttagcttcggggtgttctttattttttagtttctttattttatttttcaattggaaagAAGCGAAAAGTGAAATTGCTGACAAAGAGAGCAAAAGATTGAGTTCGTATCAGTACGTGGGGAGAACCGGTTCTGTGATTCCCACCGCTTCGTTGGCTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA