1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacctatctctgctatatctctcttactgctttcgatgatcttcactctgttcttcaattagtgttacggccgatgttcttgcagAGAATGGGGGTAAAGCTGACCGGAACTCGCTGCCCAGCTTCACCGAGTTTAGCTTGGACCAACTCAAAGCTGCCACGTCGGGGTTCTCCTCCGATAACAT
species | Vitis vinifera |
transcript | Vv08s0007g01520.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGGTGGCAATCTCACCTCAAACCCTCAGTTCTTGACCCCTCTGATCTCG AGAATGGGGGTAAAGCTGACCGGAACTCGCTGCCCAGCTTCACCGAGTTTAEST: gi|161710530|gb|FC059361.1|FC059361
genomic: CTGGTGGCAATCTCACCTCAAACCCTCAGTTCTTGACCCCTCTGATCTCGgtacctatct ... gttcttgcagAGAATGGGGGTAAAGCTGACCGGAACTCGCTGCCCAGCTTCACCGAGTTTA
EST: CTGGTGGCAATCTCACCTCAAACCCTCAGTTCTTGACCCCTCTGATCTCG AGAATGGGGGTAAAGCTGACCGGAACTCGCTGCCCAGCTTCACCGAGTTTAEST: gi|33409978|gb|CF215605.1|CF215605
genomic: CTGGTGGCAATCTCACCTCAAACCCTCAGTTCTTGACCCCTCTGATCTCGgtacctatct ... gttcttgcagAGAATGGGGGTAAAGCTGACCGGAACTCGCTGCCCAGCTTCACCGAGTTTA
EST: CTGGTGGCAATCTCACCTCAAACCCTCAGTTCTTGACCCCTCTGATCTCG AGAATGGGGGTAAAGCTGACCGGAACTCGCTGCCCAGCTTCACCGAGTTTAEST: gi|161709384|gb|FC059253.1|FC059253
genomic: CTGGTGGCAATCTCACCTCAAACCCTCAGTTCTTGACCCCTCTGATCTCGgtacctatct ... gttcttgcagAGAATGGGGGTAAAGCTGACCGGAACTCGCTGCCCAGCTTCACCGAGTTTA
EST: CTGGTGGCAATCTCACCTCAAACCCTCAGTTCTTGACCCCTCTGATCTCG AGAATGGGGGTAAAGCTGACCGGAACTCGCTGCCCAGCTTCACCGAGTTTA
genomic: CTGGTGGCAATCTCACCTCAAACCCTCAGTTCTTGACCCCTCTGATCTCGgtacctatct ... gttcttgcagAGAATGGGGGTAAAGCTGACCGGAACTCGCTGCCCAGCTTCACCGAGTTTA
tttcgatgatcttcactctgttcttcaattagtgttacggccgatgttcttgcagAGAATGGGGGTAAAGCTGACCGGAACTCGCTGCCCAGCTTCACCGAGTTTAGCTTGGACCAACTCAAAGCTGCCACGTCGGGGTTCTCCTCCGATAACAT
tgttctt CT-rich tract
ttcaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacctatctctgctatatctctcttactgctttcgatgatcttcactctgttcttcaattagtgttacggccgatgttcttgcagAGAATGGGGGTAAAGCTGACCGGAACTCGCTGCCCAGCTTCACCGAGTTTAGCTTGGACCAACTCAAAGCTGCCACGTCGGGGTTCTCCTCCGATAACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC