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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcttgtttcttctctttattaaatttcgtgacatatgtttgacaatttgattctggggtttgggcagATATTGAGATGATGAAGGAAAGATTTTCGAAATTGCTGCTTGGAGAAGACATGTCAGGGTGTGGAAACGGGGTGTGCACAGCACTGGCTATCTCCAATGC

Basic information

species Vitis vinifera
transcript Vv08s0007g01380.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g01380.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G41330.1 (Glycine max), 3'ss of exon 1
------------------gtatgtctt---gtttcttctctttatta---aatttcgtgacatatgtttgaca--atttgattctggggtttgg--gcagATATTGAGATGATGAAGGAAAGATTTTCGAAATTGCTGCTTGGAGAAGACATGTCAGGGTGTGGAAACGGGGTGTGCACAGCACTGGCTATCTCCAATGC
                   ||| | ||    ||| | || | ||| |     | |  ||| ||  || |||    |||||||| |     |     | ||| ||||||||||||||||| || ||| | |||||| | ||||||||||| |||||||| |||||||| |||||    |||||  |||||||||| |||||
agggacataaaatacattttatctttttaaatttttactatctatgatcctctctgatgatatcagtatgatgagatttgattttcattctcacttgtagAGATTGAGATGATGAAGGAGAGGTTTGCAAAATTGTTACTTGGAGAAGATATGTCAGGTTGTGGAAATGGGGTCGCTACAGCCTTGGCTATCTCAAATGC

upper sequence: Vv08s0007g01380.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G16790.1 (Glycine max), 3'ss of exon 1
--------------------------gtatgtcttgtttcttctctttattaaatttcgtgacatatgtttgacaatttgattctggggtttgg--gcagATATTGAGATGATGAAGGAAAGATTTTCGAAATTGCTGCTTGGAGAAGACATGTCAGGGTGTGGAAACGGGGTGTGCACAGCACTGGCTATCTCCAATGC
                           |   | |   |  |||||| | || |  | |||   ||  |||| |  |||||||| ||    |     | |||  |||||||||||||||| || ||| | |||||| | ||||||||||| |||||||| || ||||| |||||    ||||| |||||||| || |||||
attttatctttttaatgttttaaatttttaatgtctatcattctctctgttgatatccgtatgatgagttttatgatttgattttgattctcacttgtagAGGTTGAGATGATGAAGGAGAGGTTTGCAAAATTGTTACTTGGAGAAGATATGTCAGGTTGCGGAAATGGGGTCACTACAGCCCTGGCTATTTCAAATGC

upper sequence: Vv08s0007g01380.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G02010.1 (Arabidopsis thaliana), 3'ss of exon 1
---------------------------------gtatgtcttgtttcttctct------ttattaaatttcgtgac-----atatgtttgac--aatttgattctgg-----------ggtttgg----gcagATATTGAGATGATGAAGGAAAGATTTTCGAAATTGCTGCTTGGAGAAGACATGTCAGGGTGTGGAAACGGGGTGTGCACAGCACTGGCTATCTCCAATGC
                                 || ||  ||  ||| || ||      |||||||| |||||  |     || | | || |  | ||| |  |||            ||||||     | |||  ||||||||||||||||||||||||||||| |||||||||||||||| |||||||| | |||||| || || || |||||  | |||||||| || ||
gttcgtcaatttttatacaaatgcacaccaaatgtttgcttttattcctcactgacaatttattaaagttcgtagctttggatttttctgtctgagtttaaggctgttttgtgccactggtttgactatgtagAGGTTGAGATGATGAAGGAAAGATTTTCGAAACTGCTGCTTGGAGAAGATATGTCAGGTTCTGGAAATGGTGTCTGTACAGCTTTAGCTATCTCAAACGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttattaaatttcgtgacatatgtttgacaatttgattctggggtttgggcagATATTGAGATGATGAAGGAAAGATTTTCGAAATTGCTGCTTGGAGAAGACATGTCAGGGTGTGGAAACGGGGTGTGCACAGCACTGGCTATCTCCAATGC
     attaaattt  TA-rich tract