1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attaagctgtgagcctgtgacctgcgattttccttttccatagacagtgaatattgatacggactggttgtatttatctgagaaaatgcgatttctttagGCTACAGAAGATGGGCGCCCTAGACGTAAGTAGAGTGGTTGACAGACACCAGGGATGGCGCCTTATCACTTGCATTTGGTTACATGGTGGAGTTTTCCAT
species | Vitis vinifera |
transcript | Vv08s0007g00470.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCTTTCAACCGTTTAAGGAGAACCCTCTTCTTGGGCCTTCATCATCGAC GCTACAGAAGATGGGCGCCCTAGACGTAAGTAGAGTGGTTGACAGACACCAEST: gi|161720330|gb|FC071183.1|FC071183
genomic: TCCTTTCAACCGTTTAAGGAGAACCCTCTTCTTGGGCCTTCATCATCGACgtgagttttg ... atttctttagGCTACAGAAGATGGGCGCCCTAGACGTAAGTAGAGTGGTTGACAGACACCA
EST: TCCTTTCAACCGTTTAAGGAGAACCCTCTTCTTGGGCCTTCATCATCGAC GCTACAGAAGATGGGCGCCCTAGACGTAAGTAGAGTGGTTGACAGACACCAEST: gi|161711042|gb|FC058625.1|FC058625
genomic: TCCTTTCAACCGTTTAAGGAGAACCCTCTTCTTGGGCCTTCATCATCGACgtgagttttg ... atttctttagGCTACAGAAGATGGGCGCCCTAGACGTAAGTAGAGTGGTTGACAGACACCA
EST: TCCTTTCAACCGTTTAAGGAGAACCCTCTTCTTGGGCCTTCATCATCGAC GCTACAGAAGATGGGCGCCCTAGACGTAAGTAGAGTGGTTGACAGACACCA
genomic: TCCTTTCAACCGTTTAAGGAGAACCCTCTTCTTGGGCCTTCATCATCGACgtgagttttg ... atttctttagGCTACAGAAGATGGGCGCCCTAGACGTAAGTAGAGTGGTTGACAGACACCA
agtgaatattgatacggactggttgtatttatctgagaaaatgcgatttctttagGCTACAGAAGATGGGCGCCCTAGACGTAAGTAGAGTGGTTGACAGACACCAGGGATGGCGCCTTATCACTTGCATTTGGTTACATGGTGGAGTTTTCCAT
tattgat putative branch site (score: 3)
tttcttt putative PPT
ttgtatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaagctgtgagcctgtgacctgcgattttccttttccatagacagtgaatattgatacggactggttgtatttatctgagaaaatgcgatttctttagGCTACAGAAGATGGGCGCCCTAGACGTAAGTAGAGTGGTTGACAGACACCAGGGATGGCGCCTTATCACTTGCATTTGGTTACATGGTGGAGTTTTCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - gacctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggactgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaat