Sequence
atgc intronic sequence ATGC exonic sequence...ttttgggttaagaaggaaaaaatactgctcaacatattaagatactgcaatgctaaagattgtgttttattttgttttccttgtcaaaacaacattgcagTCTAAGGATGTACAATTCATTGGTGGAGAGATGTTTCACCGATTGTGTTGATAGCTTCCCGCGGAAATCCCTAGACAAGCAGGAAGAAACATGTGTTCGC
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110385062|gb|EC949550.1|EC949550EST: GCTAAGCTCCGAATGTCTGCTATGATCGACCAGCTCCAGATCCGCGACAG TCTAAGGATGTACAATTCATTGGTGGAGAGATGTTTCACCGATTGTGTTGA
genomic: GCTAAGCTCCGAATGTCTGCTATGATCGACCAGCTCCAGATCCGCGACAGgttctctctc ... aacattgcagTCTAAGGATGTACAATTCATTGGTGGAGAGATGTTTCACCGATTGTGTTGA
EST:
gi|110383227|gb|EC947585.1|EC947585EST: GCTAAGCTCCGAATGTCTGCTATGATCGACCAGCTCCAGATCCGCGACAG TCTAAGGATGTACAATTCATTGGTGGAGAGATGTTTCACCGATTGTGTTGA
genomic: GCTAAGCTCCGAATGTCTGCTATGATCGACCAGCTCCAGATCCGCGACAGgttctctctc ... aacattgcagTCTAAGGATGTACAATTCATTGGTGGAGAGATGTTTCACCGATTGTGTTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcaatgctaaagattgtgttttattttgttttccttgtcaaaacaacattgcagTCTAAGGATGTACAATTCATTGGTGGAGAGATGTTTCACCGATTGTGTTGATAGCTTCCCGCGGAAATCCCTAGACAAGCAGGAAGAAACATGTGTTCGC
tgctaaa putative branch site (score: 2)
tgttttattttgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttgggttaagaaggaaaaaatactgctcaacatattaagatactgcaatgctaaagattgtgttttattttgttttccttgtcaaaacaacattgcagTCTAAGGATGTACAATTCATTGGTGGAGAGATGTTTCACCGATTGTGTTGATAGCTTCCCGCGGAAATCCCTAGACAAGCAGGAAGAAACATGTGTTCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
ttttggg
- - - - -aagaagg
- - - - - - - - aaaaaat
- - - - - - - - - - - - - gctcaac
- - - - - - - - - - - - - - - - - - - - - - - -caatgct