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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagtttccgatctctctgactttactcaattcagtagtacgttttgtggatgacattaagtctatgatttgatgtgtaatttgtgtatctctggtctttgtcttttcgtttttactccacagTTTGTTTAGATGGTAGTGCCCCTGGATATCATTTTCGAAGTGGTTTTGGATCTGGCTCTAACAATTGGGTTCTTCATATAGAG

Basic information

species Vitis vinifera
transcript Vv08s0007g00290.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161721699|gb|FC070464.1|FC070464
EST:     GGATTTGGTTGACTTGACGTTGGTGCGCCATGCCAAGGATAA-GGCGCCG                         TTTGTTTAGATGGTAGTGCCCTTGGATATCATTTTCGAAGTGGTTTTGGAT
genomic: GGATTTGGTTGACTTGACGTTGGTGCGCCATGCCAAGGATAAAGGCGCCGgtatagtttc ... tactccacagTTTGTTTAGATGGTAGTGCCCCTGGATATCATTTTCGAAGTGGTTTTGGAT
EST: gi|161709860|gb|FC058920.1|FC058920
EST:     GGATTTGGTTGACTTGACGTTGGTGCGCCATGCCAAGGATAAAGGCGCCG                         TTTGTTTAGATGGTAGTGCCCCTGGATATCATTTTCGAAGTGGTTTTGGAT
genomic: GGATTTGGTTGACTTGACGTTGGTGCGCCATGCCAAGGATAAAGGCGCCGgtatagtttc ... tactccacagTTTGTTTAGATGGTAGTGCCCCTGGATATCATTTTCGAAGTGGTTTTGGAT
EST: gi|161714990|gb|FC062719.1|FC062719
EST:     GGATTTGGTTGACTTGACGTTGGTGCGCCATGCCAAGGATAAAGGCGCCG                         TTTGTTTAGATGGTAGTGCCCCTGGATATCATTTTCGAAGTGGTTTTGGAT
genomic: GGATTTGGTTGACTTGACGTTGGTGCGCCATGCCAAGGATAAAGGCGCCGgtatagtttc ... tactccacagTTTGTTTAGATGGTAGTGCCCCTGGATATCATTTTCGAAGTGGTTTTGGAT
EST: gi|161714186|gb|FC062931.1|FC062931
EST:     GGATTTGGTTGACTTGACGTTGGTGCGCCATGCCAAGGATAAAGGCGCCG                         TTTGTTTAGATGGTAGTGCCCCTGGATATCATTTTCGAAGTGGTTTTGGAT
genomic: GGATTTGGTTGACTTGACGTTGGTGCGCCATGCCAAGGATAAAGGCGCCGgtatagtttc ... tactccacagTTTGTTTAGATGGTAGTGCCCCTGGATATCATTTTCGAAGTGGTTTTGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgatgtgtaatttgtgtatctctggtctttgtcttttcgtttttactccacagTTTGTTTAGATGGTAGTGCCCCTGGATATCATTTTCGAAGTGGTTTTGGATCTGGCTCTAACAATTGGGTTCTTCATATAGAG
 atttgat  putative branch site (score: 5)
                           tctttgtcttttcgtt  putative PPT
       tgtaattt  TA-rich tract