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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaagttacaaattcttcctaaaatcaattcttaatcttttgggtcaaattaagtatttgatactctttcgttaatctaaggttgtcattgaattcccagGTGGTGGATTGGATGGCGAAGATCTGTCCGCTCAGGACAATCGGCCCAACCCTTCCCTCGGTTTACTTAGATAAACGGCTTGGAGATGACAAAGACTATG

Basic information

species Vitis vinifera
transcript Vv07s0289g00080.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161715021|gb|FC062725.1|FC062725
EST:     AGAAGGTAGACTGGGTGTTCTGCAACACCTTCTACAAGTTAGAGGAAAAG                         GTGGTGGATTGGAT
genomic: AGAAGGTAGACTGGGTGTTCTGCAACACCTTCTACAAGTTAGAGGAAAAGgtaaggtact ... gaattcccagGTGGTGGATTGGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaattaagtatttgatactctttcgttaatctaaggttgtcattgaattcccagGTGGTGGATTGGATGGCGAAGATCTGTCCGCTCAGGACAATCGGCCCAACCCTTCCCTCGGTTTACTTAGATAAACGGCTTGGAGATGACAAAGACTATG
                        cgttaat  putative branch site (score: 4)
                                                ttccc  putative PPT
     taagtattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaaagttacaaattcttcctaaaatcaattcttaatcttttgggtcaaattaagtatttgatactctttcgttaatctaaggttgtcattgaattcccagGTGGTGGATTGGATGGCGAAGATCTGTCCGCTCAGGACAATCGGCCCAACCCTTCCCTCGGTTTACTTAGATAAACGGCTTGGAGATGACAAAGACTATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - -acaaatt
- - - - - - - - - - -aaatcaa
- - - - - - - - - - - - - - - - - - -ttttggg
- - - - - - - - - - - - - - - - - - - - - - - aaattaa