Sequence
atgc intronic sequence ATGC exonic sequence...tgaagccaatttagataggctatgatatccaccttggttatttaattttatgaatatgttttaaaatgtggatttctcattataatattctttgttgcagATTGATGAAAATGTTCAAAGGGAAATAATTAATCATAGGTCTCTCAGGCACCCCAACATTGTTAGGTTTAAAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0197g00080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G20610.4 (Glycine max), 3'ss of exon 1
tgaagccaatttagataggctatgatatccaccttggttatttaattttatgaatatgttttaaaatgtggatttctcat---tataatattctt---tgttgcagATTGATGAAAATGTTCAAAGGGAAATAATTAATCATAGGTCTCTCAGGCACCCCAACATTGTTAGGTTTAAAGAG
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-----gcaattttttacggcattggtttgc-tgttagtttcttactctgatgaagttgcttactgtttttttttttttttgtgtatggtgttgttgtgtgtcgcagATTGATGAAAATGTAAAGAGGGAAATCATTAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGATTTAAAGAG
upper sequence: Vv07s0197g00080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G09460.1 (Glycine max), 3'ss of exon 1
--tgaagccaatttagataggctatgatatccaccttg-gttatttaattttatgaatatgttttaaaatgtggatttctcattataatattctttgttgcagATTGATGAAAATGTTCAAAGGGAAATAATTAATCATAGGTCTCTCAGGCACCCCAACATTGTTAGGTTTAAAGAG
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ctttttttagaatttttttccttacggcattcgtttggtgtttcttactctgatgaagttgctgactgattt---tttttgtgtgtgttgttttgtctcgcagATTGATGAAAATGTGAAGAGGGAAATTATCAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGGTTTAAAGAG
upper sequence: Vv07s0197g00080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G20610.3 (Glycine max), 3'ss of exon 1
tgaagccaatttagataggctatgatatccaccttggttatttaattttatgaatatgttttaaaatgtggatttctcat---tataatattctt---tgttgcagATTGATGAAAATGTTCAAAGGGAAATAATTAATCATAGGTCTCTCAGGCACCCCAACATTGTTAGGTTTAAAGAG-------------------------
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-----gcaattttttacggcattggtttgc-tgttagtttcttactctgatgaagttgcttactgtttttttttttttttgtgtatggtgttgttgtgtgtcgcagATTGATGAAAATGTAAAGAGGGAAATCATTAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGATTTAAAGAGGTTGGTTATGTTTTTCAAATATTTA
upper sequence: Vv07s0197g00080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA11G06250.1 (Glycine max), 3'ss of exon 1
tgaagccaattta-gataggctatgatatccaccttggttatttaattttatgaatatgttttaaaat-gtggatttctcattataatattctttgttgcagATTGATGAAAATGTTCAAAGGGAAATAATTAATCATAGGTCTCTCAGGCACCCCAACATTGTTAGGTTTAAAGAG
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-aagtatgatcaaagatcaacttttatttgttgccagtttctttttcttgttgatgaagcagtagacttatctcttccctatcatt-cgttgtgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATCCTAACATTATCAGGTTTAAGGAG
upper sequence: Vv07s0197g00080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G39020.2 (Glycine max), 3'ss of exon 1
------tgaagccaatttagataggctatgatatccaccttggttatttaattttatgaatatgttttaaaatgtggatttctcattataatattctttgttgcagATTGATGAAAATGTTCAAAGGGAAATAATTAATCATAGGTCTCTCAGGCACCCCAACATTGTTAGGTTTAAAGAG
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gatcttttagatcaatctttatttgttgccactttc---tttctttttcatgttgatgaagcagtg--gacttatctcttccctatcatt-tgctgtgtgtcacagATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATCCTAACATTATCAGGTTTAAGGAG
upper sequence: Vv07s0197g00080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G66880.1 (Arabidopsis thaliana), 3'ss of exon 1
tgaagccaatttagatag-gctatgatatccaccttggttatttaattttatgaatatgtt--ttaaaatgtggatttctca-ttataatattctttgttgcagATTGATGAAAATGTTCAAAGGGAAATAATTAATCATAGGTCTCTCAGGCACCCCAACATTGTTAGGTTTAAAGAG
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----gaaattttggatattgaaatgatttttttagttggttttgagtgttctgcttttgtagattaggacagttgtgaatgacttgtaactatgggagttgcagATTGATGAAAATGTTCAAAGGGAGATCATTAACCACAGGTCACTAAGGCATCCTAATATTGTCAGATTTAAAGAG
upper sequence: Vv07s0197g00080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G50500.1 (Arabidopsis thaliana), 3'ss of exon 1
--tgaagccaatttagataggctatgatatccaccttggttatttaattttatgaatatgtttta--aaatgtggatttctcattataatattctttgttgcagATTGATGAAAATGTTCAAAGGGAAATAATTAATCATAGGTCTCTCAGGCACCCCAACATTGTTAGGTTTAAAGAG
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tttaatggtggttacttactgttactatgattaaat--gcttttgaaaagttttgatatttctcaataaatgatgatacttttttttatggttgttt--tgcagATTGATGAAAATGTTCAGAGGGAGATTATCAATCATAGATCATTGAGACATCCTAATATTGTTAGGTTTAAAGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttatgaatatgttttaaaatgtggatttctcattataatattctttgttgcagATTGATGAAAATGTTCAAAGGGAAATAATTAATCATAGGTCTCTCAGGCACCCCAACATTGTTAGGTTTAAAGAG
ttctttgtt CT-rich tract
atttctcattataata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgaagccaatttagataggctatgatatccaccttggttatttaattttatgaatatgttttaaaatgtggatttctcattataatattctttgttgcagATTGATGAAAATGTTCAAAGGGAAATAATTAATCATAGGTCTCTCAGGCACCCCAACATTGTTAGGTTTAAAGAG
- aagccaa
- - - - - - - - - gctatga
- - - - - - - - - - - - - - ccacctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaatg