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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagatgaatcataccttatgtcattatgaaaacctacctcttatcttttataattaattaattatttatctgtgctttttctgggcttgcagTTCAATATTGCGAATCCTACGACAGGGTGTCAGAAAAAGCTCGAAATCGACGACGACCAGAAACT

Basic information

species Vitis vinifera
transcript Vv07s0191g00060.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 1
-----------------------gttagatgaatcatac---cttatgtcattatgaaaacctacctcttatcttttataattaattaattatttatctgtgctttttctgggcttgcagTTCAATATTGCGAATCCTACGACAGGGTGTCAGAAAAAGCTCGAAATCGACGACGACCAGAAACT
                       | | |||    || |    ||   |   |||||  |   |     || | |||  |   |   |  | |||  | ||   |    ||  | || |||||||| || ||||| || || || ||||| ||||| |||||||| ||||| ||||||||||| ||
gtaagacgctcctcgtcgccgttgctggatcccccagatgagctagggattttatggtagggttagatttttttttcgtgggtggcttctgattcgtgtggtttccgccttcgttttcagTTCAACATCGCGAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCT

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 1
gttagatgaatcataccttatgtcattatgaaaacctacctcttatcttttataattaattaattatttatctgtgctttttctgg-gcttgcagTTCAATATTGCGAATCCTACGACAGGGTGTCAGAAAAAGCTCGAAATCGACGACGACCAGAAACT
        || | || | |  | |  | | || | | |    |  | |||  |    |  ||     | ||||||||  |||  |  |||| |||||||| || ||||| ||  | || ||||| ||||| ||||| |||||||| ||||||||||||||
------gtaagcttatcctccg-cgctgt-aacatcgataggtggtgttt-gtgggaatctagcgtctgatctgtgcccttttcgttgcttccagTTCAACATCGCGAACCCGTCTACCGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCAGAAACT

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 1
-----------------------------------------------------gtta-gatgaatcataccttatgt-cattatgaaaacctacctcttatcttttataattaattaatt--atttatctgtgctttttctgggct---------tgcagTTCAATATTGCGAATCCTACGACAGGGTGTCAGAAAAAGCTCGAAATCGACGACGACCAGAAACT
                                                     | || |  |  |  |   ||  || | ||    ||  |    | | || | ||||  |   |||  |  |||  ||  |||||  | | |  |         |||||||||| || |||||||| || || || || ||||| |||||||| ||||||||||| | ||||||
gttctcttcttcccaaaccctagttttttatattgctgtcgtatcttctctctgctacgtcgttttttgttttgcgttcgttgccgaagtcg--ttttaatttcttattgtcgcttatgtgtattcttcgttgcttcatttcgctttgcgccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT

upper sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 1
gttagatgaatcataccttatgtcattatgaaaacctacctcttatcttttataa--ttaattaattatttatctgtgctttttctgggcttgcagTTCAATATTGCGAATCCTACGACAGGGTGTCAGAAAAAGCTCGAAATCGACGACGACCAGAAACT
      ||  | |   |  |    | ||    |  |||| | |  || | |   |  ||  ||   ||    | |     |||  | |  || ||||||||  |||||||||| || || || || ||||| |||||||| |||||||| |||||||||||
-----gtgcgtgacggcgaaatcgaata---gactctacatttgctcgtattcgagtttcctttgctaacctttttcatgtttcttcg--tttcagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcttatcttttataattaattaattatttatctgtgctttttctgggcttgcagTTCAATATTGCGAATCCTACGACAGGGTGTCAGAAAAAGCTCGAAATCGACGACGACCAGAAACT
                  aattaat  putative branch site (score: 3)
                                     ctttttctg  putative PPT
     atcttttataattaat  TA-rich tract