Sequence
atgc intronic sequence ATGC exonic sequence...aatgaagcagttgattggtatgcaatatggctttcaccttgatactaaaatgatgcagttgatttgtatgtaatatggcttattcccatgttattattagGTGGGATGCTGAAGGGCCATTTAAACCACTGCATGTGATGAATCCAACAAGACTCGCTTTTATCCGTTCCACTCTTTGCCGGCATTTTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0185g00170.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os06g05900.1 (Oryza sativa), 3'ss of exon 1
-aatgaagcagttgat-tggtatgcaatatggctttcacctt-gatactaaaatgatgcagttgatttgtatgtaatatggcttattcccatgttattattagGTGGGATGCTGAAGGGCCATTTAAACCACTGCATGTGATGAATCCAACAAGACTCGCTTTTATCCGTTCCACTCTTTGCCGGCATTTTCA
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aagtggggttacatatgtgttgtttcaaatggaatgaacctccgacttatcacctgagcatatgatt-gcttatta-gtggcacaattcc-tgcaataaacagGTGGGATTCTGAAGGTCCATTCAAGCCGTTGCATCTGATGAATCCAACTCGACTGTCTTTTATCCGGTCCACTCTCTGTAGACATTTCAG
upper sequence: Vv07s0185g00170.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G028552_T01 (Zea mays), 3'ss of exon 1
aatgaagcagttgattggtatgcaatatggctttcaccttgatactaaaatgatgca-gttgatttgtatgtaatatggcttattcccatgttattattagGTGGGATGCTGAAGGGCCATTTAAACCACTGCATGTGATGAATCCAACAAGACTCGCTTTTATCCGTTCCACTCTTTGCCGGCATTTTCA
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cttagaatcacagat-gaaatgctaaatcggcagcgaactacaggtatctctgtgtatgttttagctcattgacgatggtgctatcttctggaataaacagGTGGGATTCTAGTGGCCCATTCAAACCTTTGCATGTGATGAATCCAACCCGACTGTCTTTTATCCGCTCCACTCTCTGTAGACATTTCAG
upper sequence: Vv07s0185g00170.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA14G03030.1 (Glycine max), 3'ss of exon 1
----------------------------------------------------------------------------------aatgaa-gcagttgattggtatgcaatatggctttcaccttgatactaaaatgatgcagttgatttgtatgtaatatggct--tattcccatgttattattagGTGGGATGCTGAAGGGCCATTTAAACCACTGCATGTGATGAATCCAACAAGACTCGCTTTTATCCGTTCCACTCTTTGCCGGCATTTTCA
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gtcagctttcgaaacgaaagagagaatctgttcaatgaatttattgttataaacaccacaattaaattgcacattttttttcattgggtgaatttgttcactatttgttgaagttgttgctgcagtatgtgtgttagtttgagaatatggatgacatgtatttgccctttccttggtgtgaatagGTGGGATTCTGAAGGCCCCTTTAAGCCATTGCATGTGATGAATCCAACTAGACTTGCTTTCATCCGTTCTGCACTTTGTCGGCATTTCAA
upper sequence: Vv07s0185g00170.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G45780.1 (Glycine max), 3'ss of exon 1
aatgaagcagttgattggtatgcaatatggctttcaccttgatactaaaatgatgcagttgatttgtatgtaatatggcttattcccatgttattattagGTGGGATGCTGAAGGGCCATTTAAACCACTGCATGTGATGAATCCAACAAGACTCGCTTTTATCCGTTCCACTCTTTGCCGGCATTTTCA
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-----gtgagctttcgaatctgttgaatgaatttgttgttatagacacaagaaaatggatgacatgtatttgcc----ctttccttgttgatgtcaatagGTGGGATTCTGAAGGCCCCTTTAAACCATTGCATGTGATGAATCCTACGAGACTTGCTTTCATCCGTTCTGCACTTTGTCGACATTTCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taaaatgatgcagttgatttgtatgtaatatggcttattcccatgttattattagGTGGGATGCTGAAGGGCCATTTAAACCACTGCATGTGATGAATCCAACAAGACTCGCTTTTATCCGTTCCACTCTTTGCCGGCATTTTCA
atttgtatgtaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatgaagcagttgattggtatgcaatatggctttcaccttgatactaaaatgatgcagttgatttgtatgtaatatggcttattcccatgttattattagGTGGGATGCTGAAGGGCCATTTAAACCACTGCATGTGATGAATCCAACAAGACTCGCTTTTATCCGTTCCACTCTTTGCCGGCATTTTCA
- tgaagca
- - - - - - - - -gtatgca
- - - - - - - - - - - - -tatggct
- - - - - - - - - - - - - - - - - caccttg
- - - - - - - - - - - - - - - - - - - - - - - aaaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgcagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatgt