Sequence
atgc intronic sequence ATGC exonic sequencegtaaattatgatgactttgtgaatgatgtggaggttggagatatactacttgttaatggtggaatgatgtcattagctgtgaaatcaaagactaaggatttggttaagtgctaagTAATTGATGGTGGTGAGCTGAAATCAAGGCGTTGTTTGAATGTGCGTGGAAAAAGAGCAACTTTGCCTTCAATAACAGACAAAAACTGGGAAGATATCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0151g01100.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os10g42100.1 (Oryza sativa), 3'ss of exon 3
-------------------------------------------------------------------------gtaaattatgatgactttgtgaatgatgtggaggttggagatatactacttgttaatggtggaatgatgtcattagctgtgaaatcaaagactaaggatttggttaagtgctaagTAATTGATGGTGGTGAGCTGAAATCAAGGCGTTGTTTGAATGTGCGTGGAAAAAGAGCAACTTTGCCTTCAATAACAGACAAAAACTGGGAAGATATCAA
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gtgaggactgatctatcaatcttcatatcctgctttgattgtctttctttatgttgagttagcttgcttacaggtagacagttcagagtatggcatctacttatcattggttgtttcattgtgtgctgtagGAGGAATGATGTCACTCGCTGTCAAGTCTAAAACAGCTGATACGGTTAAGTGTGAAGTAGTTGATGGTGGGGAACTGAAATCAAGGCGCCACCTAAATGT---------------------------------------------------------
upper sequence: Vv07s0151g01100.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G40860.1 (Glycine max), 3'ss of exon 2
---------------------------gtaaattat--gatgact-----ttgtgaatga-tgtggaggt----tggagatatactacttgttaat---ggtggaatgatgtcattagctgtgaaatcaaagactaaggatttggttaagtgctaagTAATTGATGGTGGTGAGCTGAAATCAAGGCGTTGTTTGAATGTGCGTGGAAAAAGAGCAACTTTGCCTTCAATAACAGACAAAAACTGGGAAGATATCAA
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ataatctgagagttttagaggaatttattaaattgttggatgaccaccaattttgattatctgtaaagatgattttaatctcttctgattgttatttcagGAGGAATGATGTCTCTTGCTGTTAAGTCAAAGACAAAAGACTTGGTTAAATGTGAAGTTATTGATGGTGGTGAACTGAAATCTAGGCGTCATTTAAATGT---------------------------------------------------------
upper sequence: Vv07s0151g01100.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G32440.1 (Arabidopsis thaliana), 3'ss of exon 3
--------------------gtaaattat-gatgactttgt---gaatgatgtggaggttggagata--------tactacttgttaatggtggaatgatgtcattagctgtgaaatcaaagactaaggatttggttaagtgctaagTAATTGATGGTGGTGAGCTGAAATCAAGGCGTTGTTTGAATGTGCGTGGAAAAAGAGCAACTTTGCCTTCAATAACAGACAAAAACTGGGAAGATATCAA
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gtaagagtacttgtatctttgtggtttgttggagtctttgttttagttcattttgtaatgagagatggcttcttgtgttttttatattagGTGGAATGATGTCGTTAGCTGTTAAATCAAAGACGAGTGATTTGGTGAAGTGTGTGGTTATTGATGGTGGAGAGCTTCAATCTAGACGTCACTTGAATGT--------------------------------------------------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggaatgatgtcattagctgtgaaatcaaagactaaggatttggttaagtgctaagTAATTGATGGTGGTGAGCTGAAATCAAGGCGTTGTTTGAATGTGCGTGGAAAAAGAGCAACTTTGCCTTCAATAACAGACAAAAACTGGGAAGATATCAA
aaatcaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaattatgatgactttgtgaatgatgtggaggttggagatatactacttgttaatggtggaatgatgtcattagctgtgaaatcaaagactaaggatttggttaagtgctaagTAATTGATGGTGGTGAGCTGAAATCAAGGCGTTGTTTGAATGTGCGTGGAAAAAGAGCAACTTTGCCTTCAATAACAGACAAAAACTGGGAAGATATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA